Hi Francis He has not done so hence my question to you :) I am just trying to help Claude who is our favourite BioMart data provider who contributed two BioMart data sources to the ICGC Data Portal. I think this deserves a good service from you guys ;) Once you know where everything is please drop her an email.
BTW, welcome to our mailing list Francis. I was glad to see you subscribe :) cheers, a On Tue, Nov 8, 2011 at 7:38 PM, Francis Ouellette <[email protected]>wrote: > > Brett will contact this ICGC user, if he hasn't done so already, > > We are working on new documentation to explain and make all of > this more transparent to the community. > > thank you all for your patience, and cheers to all! > > f. > > -- > B.F. Francis Ouellette http://oicr.on.ca/person/francis-ouellette > > > > On 2011-11-08, at 6:44 PM, Arek Kasprzyk wrote: > > I guess Brett is MIA ;) > > Francis: would you be able to help Claude with that? > > a > > > On Fri, Nov 4, 2011 at 2:43 PM, Arek Kasprzyk <[email protected]>wrote: > >> Hi Claude, >> The ICGC WGS files are supposed to be deposited to EGA@EBI. I think the >> Spanish project is already deposited there. Perhaps some of the others too. >> If they are not there then they are most likely to be still with the >> centers that generated the data. The TCGA data included in the ICGC Portal >> is deposited elsewhere. I am cc'ing Brett Whitty who runs the ICGC Portal >> and liaises with all data providers. He will be able to give you more >> detailed information where everything is >> >> >> a >> >> >> >> >> >> >> On Fri, Nov 4, 2011 at 2:07 PM, Claude Chelala <[email protected]>wrote: >> >>> >>> If you can help us get one of the ICGC or sanger whole genome sequence >>> raw data file? >>> Claude >>> >>> >>> On 04/11/2011 18:04, "Arek Kasprzyk" <[email protected]> wrote: >>> >>> Hi Claude, >>> sorry, what projects are you talking about exactly? >>> >>> a >>> >>> >>> On Fri, Nov 4, 2011 at 2:00 PM, Claude Chelala <[email protected]> >>> wrote: >>> >>> Hi Arek >>> I was wondering if you could advise/help me to get a whole genome >>> sequence data file. There are none deposited in public repositories and not >>> sure whom to ask. >>> Anonymous data is fine, we just need to test if our server can cope with >>> data analysis pipeline. >>> Thanks >>> Claude >>> >>> >>> >>> >>> >>> This email may contain information that is privileged, confidential or >>> otherwise protected from disclosure. >>> It must not be used by, or its contents copied or disclosed to, persons >>> other than the addressee. >>> If you have received this email in error please notify the sender >>> immediately and delete the email. >>> This message has been scanned for viruses. >>> >>> >>> >>> >> > > > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users > >
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