Hi,
First of all, thanks for a great service.
I have run into a problem, querying Reactome with a concrete stable
reaction ID to retrieve stable pathway IDs:
http://central.biomart.org/martform/#!/Search_by_database_name/Reactome%20(OICR,%20Canada;%20EBI,%20UK;%20NYU%20Medical%20Center,%20USA)?datasets=pathway&id_list_filters%5B%5D=reaction_id_list&id_list_filters%5B%5D=REACT_533&id_list_filters%5B%5D=Reaction+stable+ID(s)+(e.g.+REACT_533)&attributes=stableidentifier_identifier
The reaction ID is the same as in the example filter.
The result is:
Query ERROR: caught BioMart::Exception::Database: Error during query
execution: Table 'test_reactome_mart.reaction__dm' doesn't exist
Any help is much appreciated. Thanks!
--
Dr. Rafael Alcántara
<[email protected]>
Software Engineer
Cheminformatics and Metabolism Team
European Bioinformatics Institute - EMBL
Tel. +44 (0)1223 494414
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