In the error log:
[SwingWorker-pool-1-thread-6] INFO martconfigurator - Done saving settings
org.jdom.IllegalDataException: The data "null" is not legal for a JDOM
attribute: A null is not a legal XML value.
at org.jdom.Attribute.setValue(Attribute.java:486)
at org.jdom.Attribute.<init>(Attribute.java:229)
at org.jdom.Attribute.<init>(Attribute.java:252)
at org.jdom.Element.setAttribute(Element.java:1109)
at
org.biomart.configurator.model.object.FilterData.generateXml(FilterData.java:79)
at
org.biomart.objects.objects.Filter.generateOptionXml(Filter.java:897)
at org.biomart.objects.objects.Filter.generateXml(Filter.java:669)
at
org.biomart.objects.objects.Container.generateXml(Container.java:344)
at
org.biomart.objects.objects.Container.generateXml(Container.java:333)
at
org.biomart.objects.objects.Container.generateXml(Container.java:333)
at org.biomart.objects.objects.Config.generateXml(Config.java:266)
at org.biomart.objects.objects.Config.generateXml(Config.java:213)
at org.biomart.objects.objects.Mart.generateXml(Mart.java:247)
at org.biomart.objects.objects.Mart.generateXml(Mart.java:191)
at
org.biomart.objects.objects.MartRegistry.generateXml(MartRegistry.java:157)
at
org.biomart.objects.objects.MartRegistry.generateXmlDocument(MartRegistry.java:118)
at
org.biomart.configurator.view.menu.McMenus.savePortalToFile(McMenus.java:802)
at org.biomart.configurator.view.menu.McMenus.deploy(McMenus.java:963)
at
org.biomart.configurator.view.menu.McMenus.startServer(McMenus.java:825)
at
org.biomart.configurator.view.menu.McMenus.access$300(McMenus.java:82)
at
org.biomart.configurator.view.menu.McMenus$4.doInBackground(McMenus.java:875)
at
org.biomart.configurator.view.menu.McMenus$4.doInBackground(McMenus.java:862)
at javax.swing.SwingWorker$1.call(SwingWorker.java:277)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at javax.swing.SwingWorker.run(SwingWorker.java:316)
at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:662)
[Thread-24] INFO martconfigurator - ./scripts/biomart-server.sh stop
On 02/08/2012 04:42 PM, Gert Hulselmans wrote:
I tried to use my config file I made with rc6, but rc7 can't save it
anymore.
But it can open it fine and shows the right values.
Why doesn't it want to save it when it doesn't complain while opening
the config file?
Thanks,
- Gert
On 02/08/2012 02:25 PM, Marie Wong-Erasmus wrote:
Yes Gert,
you can do this in RC7 via the martconfigurator (attached img)
select the attribute you want to have checked& for a particular
attribute
set property default to true
hope this helps,
Marie
On 12-02-08 4:47 AM, "Gert Hulselmans"<[email protected]>
wrote:
Hi,
Is it possible with Biomart v 0.8 rc6/7 to enable some attributes in
the
HTML output, by default.
It is very annoying to select them manually every time.
Thanks,
Gert Hulselmans
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