Hi Aaron, we have only received an official communication from Ensembl about the update to 66 today so i don't think any update was attempted before this date. Could you give me more details on which BioMart server you are using (08 or 07) and if you have had tried a 'notify by email' option for your download?
a On Wed, Feb 29, 2012 at 10:50 AM, Aaron Webber < [email protected]> wrote: > Not sure if this is the correct email address for a query. > > I've been trying to download all the human 3'UTRs for protein-coding genes. > > Starting at Martview > Ensembl Version 65 > GRCh37 human genome > Filters: Protein-coding > Attributes: Gene ID, Transcript ID, 3'UTR > > I've tried downloading as a Fasta file, a compressed (.gz) Fasta file, and > as a webfile, all three options on both a PC and a Mac. > > The same error occurred in every case - MySQL connection was lost during > the download, approximately 20% of the way through, or less. > > I noticed Martview was temporarily listing Version 66 last week but has > returned to Version 65 now? Perhaps it is a temporary problem caused by > instability during an upgrade? > > Best wishes, > > Aaron Webber. > > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users > > -- Arek Kasprzyk, MD, MSc, PhD BioMart Project Lead
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