PS It is unlikely to be due to local problem on my machine as i tried it on a different part of campus as well, on both PC and Mac.
I guess it could conceivably be a university-wide problem with the network...although downloads from UCSC genome browser seem to be working just fine at the moment. Best wishes, Aaron. ________________________________ From: Arek Kasprzyk [[email protected]] Sent: 29 February 2012 15:57 To: Aaron Webber Cc: [email protected] Subject: Re: [BioMart Users] Problem downloading data Hi Aaron, we have only received an official communication from Ensembl about the update to 66 today so i don't think any update was attempted before this date. Could you give me more details on which BioMart server you are using (08 or 07) and if you have had tried a 'notify by email' option for your download? a On Wed, Feb 29, 2012 at 10:50 AM, Aaron Webber <[email protected]<mailto:[email protected]>> wrote: Not sure if this is the correct email address for a query. I've been trying to download all the human 3'UTRs for protein-coding genes. Starting at Martview Ensembl Version 65 GRCh37 human genome Filters: Protein-coding Attributes: Gene ID, Transcript ID, 3'UTR I've tried downloading as a Fasta file, a compressed (.gz) Fasta file, and as a webfile, all three options on both a PC and a Mac. The same error occurred in every case - MySQL connection was lost during the download, approximately 20% of the way through, or less. I noticed Martview was temporarily listing Version 66 last week but has returned to Version 65 now? Perhaps it is a temporary problem caused by instability during an upgrade? Best wishes, Aaron Webber. _______________________________________________ Users mailing list [email protected]<mailto:[email protected]> https://lists.biomart.org/mailman/listinfo/users -- Arek Kasprzyk, MD, MSc, PhD BioMart Project Lead
_______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
