Dear Aritra, Your question is data specific, could you please forward your question to the Ensembl Helpdesk team (http://www.ensembl.org/Help/Contact) and they will get back to you.
Thank you for your feedback. Best Regards, Thomas On 16 Mar 2012, at 12:34, Aritra Deb wrote: > Hello, > > I would like to mention two more difficulties that I have faced. In the > Region slot in Features there are some more options other than 22 > autosomes,X,Y and MT (e.g. HG536_PATCH, HSCHR4_1 etc.). I see that some > LincRNAs are included in these also.Could you tell me what these are? They > are also present in ENSEMBL Gene65 but no lincRNAs were included in them. Is > it because of the bug u mentioned? Let me know. Another thing is that, > whenever I try to view the cDNA sequence of a transcript of any lincRNA gene, > I found in most of the cases there are some variations shown within the > sequences, highlighted by green color. There is also given some code indicate > such variations (W for T, K for G, R for A etc.). Please help me to interpret > these code correctly. Thanks. > > Aritra > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users -- Thomas Maurel Bioinformatician - Ensembl Production Team European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton Cambridge - CB10 1SD - UK
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