Hello, I would like to mention two more difficulties that I have faced. In the Region slot in Features there are some more options other than 22 autosomes,X,Y and MT (e.g. HG536_PATCH, HSCHR4_1 etc.). I see that some LincRNAs are included in these also.Could you tell me what these are? They are also present in ENSEMBL Gene65 but no lincRNAs were included in them. Is it because of the bug u mentioned? Let me know. Another thing is that, whenever I try to view the cDNA sequence of a transcript of any lincRNA gene, I found in most of the cases there are some variations shown within the sequences, highlighted by green color. There is also given some code indicate such variations (W for T, K for G, R for A etc.). Please help me to interpret these code correctly. Thanks.
Aritra
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