Hi Olivier, you should be able to pick up all your datasets now a
On Thu, Apr 19, 2012 at 9:39 AM, Arek Kasprzyk <[email protected]>wrote: > Hi Olivier, > no problem. I have forwarded a request to run update to pick up your > latest datasets in our Central Portal. > > a > > > On Wed, Apr 18, 2012 at 10:27 AM, Olivier Arnaiz > <[email protected]>wrote: > >> >> Le 18 avr. 12 à 16:25, Arek Kasprzyk a écrit : >> >> Hi Olivier, >> When did you guys update your service? >> >> >> long time ago ... >> >> did you notify the "users" mailing list? >> >> >> I did not :-/ . This is probably the issue. thanks. >> >> >> If not, this is probably just a question of the update on our side >> >> >> a >> >> >> On Wed, Apr 18, 2012 at 10:14 AM, Olivier Arnaiz >> <[email protected]>wrote: >> >>> Yes but it does not work for the 4 other datasets : >>> >>> 'micronuclear_ies' >>> >>> 'macronuclear_exon' >>> >>> 'macronuclear_intergenic' >>> >>> 'macronuclear_intron' >>> >>> It is true, they are quite new ... >>> >>> >>> >>> Thanks >>> Olivier >>> >>> >>> >>> Le 18 avr. 12 à 16:06, Arek Kasprzyk a écrit : >>> >>> Hi Oliver, >>> I quickly checked and everything seems to be working fine on our side: >>> >>> http://www.biomart.org/biomart/martservice?type=datasets&mart=biomartDB >>> >>> http://www.biomart.org/biomart/martservice?type=attributes&dataset=macronuclear >>> >>> >>> >>> I am cc'ing Steffen who is the R expert. Perhaps he can shed some light >>> on it >>> >>> a >>> >>> >>> On Tue, Apr 17, 2012 at 12:00 PM, Olivier Arnaiz <[email protected] >>> > wrote: >>> >>>> Hi Arek, >>>> >>>> To the central portal. >>>> >>>> Thanks >>>> Olivier >>>> >>>> Le 17 avr. 12 à 16:38, Arek Kasprzyk a écrit : >>>> >>>> Hi Olivier, >>>> is your R interface talking to the >>>> >>>> http://www.biomart.org/biomart/martview >>>> >>>> or >>>> >>>> http://paramecium.cgm.cnrs-gif.fr/biomart/martview >>>> >>>> ? >>>> >>>> >>>> a >>>> >>>> >>>> On Mon, Apr 16, 2012 at 4:34 AM, Olivier Arnaiz <[email protected] >>>> > wrote: >>>> >>>>> Hello, >>>>> >>>>> I am the parameciumDB's developper. >>>>> I would like to use the R interface : "biomaRt", but i can not see all >>>>> my datasets in the database "PARAMECIUM GENOME (CNRS FRANCE)" ... >>>>> >>>>> http://paramecium.cgm.cnrs-gif.fr/biomart/martview >>>>> >>>>> Is it normal ? How can I fix the problem ? >>>>> >>>>> Thanks >>>>> >>>>> Best >>>>> Olivier Arnaiz >>>>> >>>>> >>>>> >>>>> >>>>> -- >>>>> Olivier Arnaiz >>>>> CGM UPR3404 - CNRS >>>>> 91198 Gif-sur-Yvette >>>>> 01 69 82 43 75 >>>>> >>>>> ParameciumDB: >>>>> http://paramecium.cgm.cnrs-gif.fr/ >>>>> Cildb >>>>> http://cildb.cgm.cnrs-gif.fr >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>> >>>> >>>> >>>> -- >>>> Olivier Arnaiz >>>> CGM UPR3404 - CNRS >>>> 91198 Gif-sur-Yvette >>>> 01 69 82 43 75 >>>> >>>> ParameciumDB: >>>> http://paramecium.cgm.cnrs-gif.fr/ >>>> Cildb >>>> http://cildb.cgm.cnrs-gif.fr >>>> >>>> >>>> >>>> >>>> >>>> >>> >>> -- >>> Olivier Arnaiz >>> CGM UPR3404 - CNRS >>> 91198 Gif-sur-Yvette >>> 01 69 82 43 75 >>> >>> ParameciumDB: >>> http://paramecium.cgm.cnrs-gif.fr/ >>> Cildb >>> http://cildb.cgm.cnrs-gif.fr >>> >>> >>> >>> >>> >>> >> >> -- >> Olivier Arnaiz >> CGM UPR3404 - CNRS >> 91198 Gif-sur-Yvette >> 01 69 82 43 75 >> >> ParameciumDB: >> http://paramecium.cgm.cnrs-gif.fr/ >> Cildb >> http://cildb.cgm.cnrs-gif.fr >> >> >> >> >> >> > > > -- > > Arek Kasprzyk, MD, MSc, PhD > BioMart Project Lead > > www.biomart.org > > -- Arek Kasprzyk, MD, MSc, PhD BioMart Project Lead www.biomart.org
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