Hi Irsan,
you cant use chromosomal_region for this query. You would need
band_start and band_end filters for this.
HTH,
Syed
On 07/05/2012 15:39, Kooi, E.I. wrote:
Hi there,
Suppose I am interested to get all the human ensembl gene ids from the
following chromosomal locations (cytobands):
1q31-1q32.3
2p24.1-2p24.3
6p21.1-6p22.3
13q14.11-13q22.3
19q13.11-19q13.43
How can I put that in the "chromosomal_region" filter from my mart-object?
human_mart<-useMart("ensembl",dataset="hsapiens_gene_ensembl")
attribute_numbers<-c(1,12,5:7,9,4)
atts<-listAttributes(human_mart)[attribute_numbers,1]
query<-getBM(attributes=atts,filters=c("chromosomal_region"),values=list(...?????...),mart=human_mart)
Many thanks in advance :-)
Irsan
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