Dear mailing list,
I was using to Ensembl Biomart web interface to retrieve the chromsome
locations of my genes of interest (gene symbols). I chose Ensembl Genes
66 and Homo Sapiens genes (GRCh37.p6) as dataset. For filters I chose to
limit to genes with HGNC IDs, and gave a few HGNC genes symbols. For
Attributes I chose Ensembl Gene ID, Ensembl Transcript ID, Chromosome
Name, Gene Start (bp), Gene End (bp), Transcript Start (bp) and
Transcript End (bp). In the results table I have many transcripts with
different start and stop positions corresponding to one gene. This is
fine. It looks like the Gene Start is the minimum of all Transcript
Start and the Gene Stop is the maximum of all Transcript End. Could
anyone confirm this? This is important to me because in the next step I
need to find the SNPs in these chromosome regions.
Thank you in advance!
Yong
--
Dr. Yong Li
AG PD Dr. Anna Koettgen, MPH
Universitaetsklinikum Freiburg
Innere Medizin IV
Tel +49 761 270-78210 / Fax -78040
Berliner Allee 29, 79110 Freiburg
[email protected]
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