Dear all,
The new Ensembl marts for release 67 are live on www.ensembl.org and
www.biomart.org.
The following improvements and modifications have been made :
Ensembl Genes 67 :
Added new species Nile Tilapia (Oreochromis niloticus)
Updated Human assembly to GRCh37.p7, Pig (Sus scrofa) assembly to
Sscrofa10.2 and updated Squirrel (Spermophilus tridecemlineatus) to spetri2.
Caenorhabditis elegans assembly name has been updated to WBcel215
Added the Ensembl exon id attribute for all the species in the features
page.
The miRNA Gene type filter for Caenorhabditis elegans has been
reinstated
Ensembl Variation 67:
Added new variation species Macaque (Macaca mulatta)
New Human somatic structural variation dataset with data from COSMIC 58.
Updated Pig, Zebrafish, Rat, Chimpanzee and Orangutan to dbSNP 136
Updated the human somatic variation database to COSMIC 58 data
SIFT and Polyphen score are masked out for this release due to a known
bug. These scores will be reintroduced for release 68.
The "peptide shift" attribute has been renamed to "protein allele"
The "structural variation accession" attribute has been renamed to
"structural variation name" and it is now linked to the structural variation
tab.
The structural variation data for Sus scrofa is absent for this releas
Ensembl Regulation 67:
Added the segmentation feature data in the filter and attribute sections
Vega 47 :
Updated Human assembly to GRCh37.p7
Added the quick go data in the filter and attribute sections for Human
and Zebrafish.
A complete list of the changes in release 67 can be found at
http://www.ensembl.org/info/website/news.html
Regards,
Thomas
--
Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
Wellcome Trust Genome Campus, Hinxton
Cambridge - CB10 1SD - UK
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