Biomart Community,

 

We have a local Biomart installation on a Linux server (lets say the
hostname is foobar.edu) and used the MartConfigurator tool to setup a
mart.  The data source was:

Type: URL

Host: www.biomart.org

Marts: snp

Datasets: hsapiens_snp

 

With the registry XML saved and the webserver started on port 9000, we
can successfully query the data source through the web GUI.  We are now
attempting to replicate this query through the Java API using the same
identical registry XML file on the server foobar.edu. Executing the Java
API client causes network requests to be sent to www.biomart.org
directly.  This surprised our team as we though the requests should be
going to the Biomart server we have running at foobar.edu:9000.  Is
there a way to have the Java API talk to a local Biomart server?

 

Thank you,

 

-Patrick Duffy

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