Syed, You are correct. It looks like a misunderstanding on our part.
Is it straightforward to bring the data in locally and point our local Biomart server to use these local marts. Can this be done using the Mart Configurator tool as well? Thank you, -Patrick -----Original Message----- From: Syed Haider [mailto:[email protected]] Sent: Thursday, June 07, 2012 11:49 AM To: Duffy, Patrick H. Cc: [email protected] Subject: Re: [BioMart Users] Java API sending requests to biomart.org rather than local Biomart install Patrick, i assume you have installed the biomart server locally using the registry file that points to biomart.org i-e you have no data locally, only the software/webserver. In this case, the API even if it talks to your server would eventually send the request over to biomart.org to retrieve the data. I guess thats whats happening ? Best, Syed On 06/06/2012 16:58, Duffy, Patrick H. wrote: > Biomart Community, > > We have a local Biomart installation on a Linux server (lets say the > hostname is foobar.edu) and used the MartConfigurator tool to setup a > mart. The data source was: > > Type: URL > > Host: www.biomart.org <http://www.biomart.org> > > Marts: snp > > Datasets: hsapiens_snp > > With the registry XML saved and the webserver started on port 9000, we > can successfully query the data source through the web GUI. We are now > attempting to replicate this query through the Java API using the same > identical registry XML file on the server foobar.edu. Executing the > Java API client causes network requests to be sent to www.biomart.org > <http://www.biomart.org> directly. This surprised our team as we > though the requests should be going to the Biomart server we have > running at foobar.edu:9000. Is there a way to have the Java API talk > to a local Biomart server? > > Thank you, > > -Patrick Duffy > > > > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
