Hi Pietro, apologies, the 07 Portal seems to be broken at the moment. Please bear with us while we try to fix the issue
thank you a On Sat, Jul 7, 2012 at 12:47 PM, Pietro Palladino <[email protected] > wrote: > Hello, > I'm a post-doc at University of Perugia and I'm trying to download some > data from BioMart portal ver. 0.7. > > My query is about all Flank-coding region (Gene) sequences of Homo > Sapiens of upstream length of 1000bp, this is the Xml of the query: > > <?xml version="1.0" encoding="UTF-8"?> > <!DOCTYPE Query> > <Query virtualSchemaName = "default" formatter = "FASTA" header = "0" > uniqueRows = "0" count = "" datasetConfigVersion = "0.6" > > <Dataset name = "hsapiens_gene_ensembl" interface = "default" > > <Filter name = "upstream_flank" value = "1000"/> > <Attribute name = "ensembl_gene_id" /> > <Attribute name = "coding_gene_flank" /> > </Dataset> > </Query> > > > > The problem is that when I try to retrieve results (either the first 10 > results in the Results page, or all results as a file), I got always some > kind of different errors and I'm not able to download any data. > Note that, of course, I already tried to start a new session, restart the > browser or clear its cache. I tried with the latest versions of Google > Chrome and Mozilla Firefox from two different computers. > Thanks in advance. > Here you are the descriptions of two different errors I got: > > ERROR: caught BioMart::Exception::Query: You need to define virtual schema > name in order to create a Query object > > If you repeatedly get directed to this error page, there may be a problem > with your current session parameters. To clear your session and start with > a clean slate, please click the *New* button below. > > Stacktrace: > Exception::Class::Base::throw /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/Query.pm:93 > BioMart::Query::_new /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/RootI.pm:64 > BioMart::RootI::new /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/Web.pm:1968 > BioMart::Web::handle_request /srv/biomart_server/ > biomart.org/biomart-perl/cgi-bin/martview:96 > (eval) /srv/biomart_server/biomart.org/biomart-perl/cgi-bin/martview:95 > ModPerl::ROOT::ModPerl::Registry::srv_biomart_server_biomart_2eorg_biomart_2dperl_cgi_2dbin_martview::handler > /usr/lib/perl5/ModPerl/RegistryCooker.pm:204 > (eval) /usr/lib/perl5/ModPerl/RegistryCooker.pm:204 > ModPerl::RegistryCooker::run /usr/lib/perl5/ModPerl/RegistryCooker.pm:170 > ModPerl::RegistryCooker::default_handler > /usr/lib/perl5/ModPerl/Registry.pm:31 > ModPerl::Registry::handler -e:0 > (eval) -e:0 > > ERROR: caught BioMart::Exception: non-BioMart die(): Can't locate object > method "setTable" via package "BioMart::Configuration::Attribute" at > /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Query.pm line > 1321. > > If you repeatedly get directed to this error page, there may be a problem > with your current session parameters. To clear your session and start with > a clean slate, please click the New button below. > > Stacktrace: > Exception::Class::Base::new /srv/biomart_server/ > biomart.org/biomart-perl/cgi-bin/martview:101 > ModPerl::ROOT::ModPerl::Registry::srv_biomart_server_biomart_2eorg_biomart_2dperl_cgi_2dbin_martview::handler > /usr/lib/perl5/ModPerl/RegistryCooker.pm:204 > (eval) /usr/lib/perl5/ModPerl/RegistryCooker.pm:204 > ModPerl::RegistryCooker::run /usr/lib/perl5/ModPerl/RegistryCooker.pm:170 > ModPerl::RegistryCooker::default_handler > /usr/lib/perl5/ModPerl/Registry.pm:31 > ModPerl::Registry::handler -e:0 > (eval) -e:0 > > -- > ========================================= > Ing. Pietro Palladino, Ph.D. > Information Technology Engineer > > University of Perugia > Department of Experimental Medicine and Biochemical Sciences > Microbiology Section > Via del Giochetto - I-06126 Perugia > ========================================= > > > > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users > >
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