By strange coincidence a colleague has just reported a similar problem which affects VectorBase and Ensembl Genomes' 0.7 marts for Anopheles gambiae.
The gene count is 13k but when you add GO attributes it still says 13k but the output contains only 8k genes (roughly the same number as when setting the "has GO term" filter, but note the behaviour happens with NO FILTERS). The same happens with Interpro but it only drops to 12k. Our biomart people will be having a look into the problem, I just wanted to share the "me too". On Mon, Apr 2, 2012 at 8:56 AM, Tom A <[email protected]> wrote: > 0507080 and select only gene name and description I get the results. When I > select anything more like Interpro Description all the fileds disapear and I > got null results in each column. Even if the RNA was not coding (but it is > and have extensive annotation on Ensembl) I stil _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
