Hi Harish, The problem is that the attribute should be called illumina_human660wquad, not Illumina_Human660Wquad.
Taverna is getting the wrong attribute ID from the Biomart configuration for this dataset - http://www.biomart.org/biomart/martservice?type=configuration&dataset=hsapiens_snp I think it will require a fix from Biomart so I'm copying this to the Biomart support list. David. On 30 Aug 2012, at 14:15, <[email protected]> <[email protected]> wrote: > > Greetings Alan, > Thank you for your prompt reply. Please find attached an example workflow > that gives the error message that I was talking about. Basically, the > workflow determines genomic location of the gene (provided as a constant > input) and feeds it to the next biomart service that should return all the > Illumina-chip specific snp ids, instead it issues the error message. > Best Regards, > Harish. > ________________________________________ > From: Alan R Williams [[email protected]] > Sent: Thursday, August 30, 2012 2:42 PM > To: Dharuri, H.K. (HG) > Cc: [email protected] > Subject: Re: Problems with Biomart service > > On 30/08/2012 12:38, [email protected] wrote: >> Hi, > > Hello > >> I am having issues with the Biomart service within Taverna. More >> specifically, I am using the service to generate Illumina SNP IDs given >> an input of chromosome name and start and end positions. This works well >> with other "attributes" like the affy IDs. Also, I looked up the online >> version of Biomart and it seems to be working fine, I am wondering if >> this is a problem with Taverna. The error message issued was: "Query >> ERROR: caught BioMart::Exception::Usage: Attribute >> Illumina_Human660Wquad NOT FOUND". >> >> Please let me know what you think of this. > > Are you able to send the workflow or even better a smaller version of > the workflow that just calls the service? > >> Best Regards, >> >> Harish. > > Alan<error_prone_biomart_service.t2flow> myGrid Support [email protected] _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
