Hi all, I'm fairly new to biomart and I'm trying to set one up locally. For this I took the 0.8 rc7 from the svn repo and took the CentralPortal.xml to work from - as it has most resources and thus also some nice preconfigured filters/attributes etc.
Now, I'm quite confused with how to setup the various sources and adding new filters.(I think) I have a simple query for which I'm unable to get the results for. "I would like to retrieve all Genes mentioned in the MGI database, which have a Human ortholog. " I first thought to just query the MGI database through the portal and add the attribute HUGO ID without setting any other filters - but unfortunately for my query that retrieves all features with or without a HUGO ID. Thus I, since I have a local installation I tried to create a filter (which does not seem to be documented how to do so), but did not find how to configure one that would be similar to: Has attribute [attribute] :: True/False. How do I get the results for the above mentioned query through biomart? And is there more documentation about creating filters? Cheers, Jelle _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
