Hi all,
I'm working with Biomart 0.8 rc7 and I am having some problems when I try to add new sources by the martconfigurator. I don't understand what's the problem because I could do it some months ago. I'm setting the parameters: Type url, host: http://www.biomart.org , port 80 and Path: /biomart/martservice But I see in the terminal the error: /dades/Biomart_Development/biomart_COPD bioinfo-new:/dades/Biomart_Development/biomart_COPD # ./scripts/martconfigurator.sh Starting MartConfigurator please wait .... [AWT-EventQueue-0] INFO martconfigurator - ...martconfigurator started. [AWT-EventQueue-0] INFO martconfigurator - Loading resources from org/biomart/configurator/resources/messages [AWT-EventQueue-0] INFO martconfigurator - Done loading resources [AWT-EventQueue-0] INFO martconfigurator - Done loading settings 2012-09-06T12:32:55.171+0200 unknown: Java 1.6.0_26 (VM 20.1-b02, runtime 1.6.0_26-b03) 2012-09-06T12:32:55.172+0200 unknown: Linux 2.6.16.21-0.8-smp/i386 x8 2012-09-06T12:32:55.172+0200 unknown: (hang #1) event dispatch thread stuck processing event for 1.08s so far: java.net.PlainSocketImpl.socketConnect(Native Method) java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:351) java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:213) java.net.PlainSocketImpl.connect(PlainSocketImpl.java:200) java.net.Socket.connect(Socket.java:529) java.net.Socket.connect(Socket.java:478) sun.net.NetworkClient.doConnect(NetworkClient.java:163) sun.net.www.http.HttpClient.openServer(HttpClient.java:394) . . . It seems to be a problem of Java but I haven't changed the version... Thanks, Joan Joan Protasio, Bioinformatician & Software Engineer Bioinformatics Unit http://bioinformatics.fcrb.es/<http://bioinformatics.fcrb.es/%3chttp:/bioinformatics.fcrb.es/bioinformatics/> August Pi i Sunyer Biomedical Research Institute (IDIBAPS) Phone: 93.227.54.00 (Ext. 4522) C/ Rosselló 153 08036 Barcelona
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