glad it worked. Syed
On 10 September 2012 15:54, <[email protected]> wrote: > Exactly Syed, it was exactly that. I had errors in the proxy > configuration file. Now it works and I can add the sources from > biomart.org.**** > > ** ** > > Thank you for your help.**** > > ** ** > > ** ** > > Joan**** > > ** ** > > *De:* [email protected] [mailto:[email protected]] *En > nombre de *Syed Haider > *Enviado el:* lunes, 10 de septiembre de 2012 13:54 > *Para:* PROTASIO, JOAN (IDIBAPS) > *CC:* [email protected] > *Asunto:* Re: [BioMart Users] Adding new source java error**** > > ** ** > > Hi Joan,**** > > ** ** > > please check whether you need to set proxy to access sites outside your > intranet ?**** > > ** ** > > also, whats the exact series of steps you do to reproduce this error ?**** > > ** ** > > Syed**** > > ** ** > > > > On 6 September 2012 11:44, <[email protected]> wrote: > > Hi all, > > > > > > > > > > > > I’m working with Biomart 0.8 rc7 and I am having some problems when I > try to > > add new sources by the martconfigurator. I don’t understand what’s the > > problem because I could do it some months ago. > > > > > > > > I’m setting the parameters: Type url, host: http://www.biomart.org , > port 80 > > and Path: /biomart/martservice > > > > > > > > But I see in the terminal the error: > > > > > > > > /dades/Biomart_Development/biomart_COPD > > > > bioinfo-new:/dades/Biomart_Development/biomart_COPD # > > ./scripts/martconfigurator.sh > > > > Starting MartConfigurator please wait .... > > > > [AWT-EventQueue-0] INFO martconfigurator - ...martconfigurator started. > > > > [AWT-EventQueue-0] INFO martconfigurator - Loading resources from > > org/biomart/configurator/resources/messages > > > > [AWT-EventQueue-0] INFO martconfigurator - Done loading resources > > > > [AWT-EventQueue-0] INFO martconfigurator - Done loading settings > > > > 2012-09-06T12:32:55.171+0200 unknown: Java 1.6.0_26 (VM 20.1-b02, runtime > > 1.6.0_26-b03) > > > > 2012-09-06T12:32:55.172+0200 unknown: Linux 2.6.16.21-0.8-smp/i386 x8 > > > > 2012-09-06T12:32:55.172+0200 unknown: (hang #1) event dispatch thread > stuck > > processing event for 1.08s so far: > > > > java.net.PlainSocketImpl.socketConnect(Native Method) > > > > java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:351) > > > > java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:213) > > > > java.net.PlainSocketImpl.connect(PlainSocketImpl.java:200) > > > > java.net.Socket.connect(Socket.java:529) > > > > java.net.Socket.connect(Socket.java:478) > > > > sun.net.NetworkClient.doConnect(NetworkClient.java:163) > > > > sun.net.www.http.HttpClient.openServer(HttpClient.java:394) > > > > . > > > > . > > > > . > > > > > > > > > > > > It seems to be a problem of Java but I haven’t changed the version… > > > > > > > > > > > > Thanks, > > > > > > > > Joan > > > > > > > > > > > > > > > > > > > > > > > > > > > > Joan Protasio, Bioinformatician & Software Engineer > > Bioinformatics Unit http://bioinformatics.fcrb.es/ > > August Pi i Sunyer Biomedical Research Institute (IDIBAPS) > > Phone: 93.227.54.00 (Ext. 4522) > > C/ Rosselló 153 > > 08036 Barcelona > > > > > > > > > > _______________________________________________ > > Users mailing list > > [email protected] > > https://lists.biomart.org/mailman/listinfo/users > >**** >
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