Hi Guys,
I have a mart generated for a set of species where the GO annotations
are mostly on the translation. For a few species they are located on
the transcript.
When using the "Count" button after defining a GO Accession filter, for
the species where the annotation is on the translation a count is
returned. If the annotations are on the transcript then an error is
returned. Both return the correct number of results when the "Results"
button is pressed.
In marteditor the template defines a link_go_closure with the following
properties set:
tableconstraint: ontology_go__dm
key: translation_id_1068_key
field: dbprimary_acc_1074
For the species where there the annotations are on the transcript there
is a SpecificFilterContent for each species with the following properties:
tableconstraint:
key: transcript_id_1064_key
field: feature_value
Does the count rely solely on the link_go_closure properties, or is
there a way to get it to recognise specific differences between species
as in the case of the Results code?
Thank you,
Mark
--
Mark McDowall Ensembl Genomes Bioinformatician
EMBL-EBI Tel: +44-(0)1223-494589
Wellcome Trust Genome Campus
Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/
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