Hi Ellen, I have now had an opportunity to try your file and it seemed to have produced the correct config structure (if I understood your problem correctly)
This is what I did: 1. Imported your schema 2. Added data source with one main table 3. Invoked 'data source management' window 4. Added second dataset 5. Updated both datasets 6. Created a config 7. Started the server I was able to query it through GUI (did not get any results bc the schema was empty but did not get any errors either) a On Thu, Dec 6, 2012 at 2:19 PM, Ellen Schofield < [email protected]> wrote: > Hi Arek, > > Sent to you directly. > > Many thanks, > > Ellen. > > -- [email protected] > JDRF/WT Diabetes and Inflammation Laboratory (DIL) > Cambridge Institute for Medical Research (CIMR) > Wellcome Trust/MRC Building > Addenbrooke's Hospital Hills Road Cambridge CB2 0XY > Tel: 01223 763215 > > On 06/12/12 14:10, Arek Kasprzyk wrote: > > Hi Ellen, > would you mind sending me your schema so I can double check here? > > > cheers, > a > > > > On Thu, Dec 6, 2012 at 10:25 AM, Ellen Schofield < > [email protected]> wrote: > >> Hi All, >> >> I hope somebody is able to help me as I'm struggling with this. I am >> using BioMart 0.8rc6 and MartConfigurator as part of that. I have a db >> with 5 different datasets, all of which have the same structure (one main >> table and one dm table). I can use MartConfigurator with one dataset to >> create a working mart for the main/dm table in that dataset, suggesting >> that the structure is correct. However, if I try building a mart on one of >> the main tables (with it's dimension table) and request building it with a >> partition table causes a java null pointer exception (MartController.java >> line 1315). Building the same partition-based mart without the dm tables >> present works. >> >> Am really hoping somebody can point out what I'm doing wrong? >> >> Many thanks. >> Ellen. >> >> -- >> [email protected] >> JDRF/WT Diabetes and Inflammation Laboratory (DIL) >> Cambridge Institute for Medical Research (CIMR) >> Wellcome Trust/MRC Building >> Addenbrooke's Hospital Hills Road Cambridge CB2 0XY >> Tel: 01223 763215 >> >> _______________________________________________ >> Users mailing list >> [email protected] >> https://lists.biomart.org/mailman/listinfo/users >> > > > -- Arek Kasprzyk, MD, MSc, PhD BioMart Project Lead www.biomart.org
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