Hi Arek,
Many thanks for your time. Good to know that the structure is OK.
These are the steps that I did...
Imported as a relation mart
Select a main table and then ticked "Partition Table" at bottom of
wizard screen
Finish -> Java error & stack trace....
So I didn't get even as far as you :-(
Does the above make sense?
Ellen.
--
[email protected]
JDRF/WT Diabetes and Inflammation Laboratory (DIL)
Cambridge Institute for Medical Research (CIMR)
Wellcome Trust/MRC Building
Addenbrooke's Hospital Hills Road Cambridge CB2 0XY
Tel: 01223 763215
On 12/12/12 10:30, Arek Kasprzyk wrote:
Hi Ellen,
I have now had an opportunity to try your file and it seemed to have
produced the correct config structure (if I understood your problem
correctly)
This is what I did:
1. Imported your schema
2. Added data source with one main table
3. Invoked 'data source management' window
4. Added second dataset
5. Updated both datasets
6. Created a config
7. Started the server
I was able to query it through GUI (did not get any results bc the
schema was empty but did not get any errors either)
a
On Thu, Dec 6, 2012 at 2:19 PM, Ellen Schofield
<[email protected]
<mailto:[email protected]>> wrote:
Hi Arek,
Sent to you directly.
Many thanks,
Ellen.
--
[email protected] <mailto:[email protected]>
JDRF/WT Diabetes and Inflammation Laboratory (DIL)
Cambridge Institute for Medical Research (CIMR)
Wellcome Trust/MRC Building
Addenbrooke's Hospital Hills Road Cambridge CB2 0XY
Tel:01223 763215 <tel:01223%20763215>
On 06/12/12 14:10, Arek Kasprzyk wrote:
Hi Ellen,
would you mind sending me your schema so I can double check here?
cheers,
a
On Thu, Dec 6, 2012 at 10:25 AM, Ellen Schofield
<[email protected]
<mailto:[email protected]>> wrote:
Hi All,
I hope somebody is able to help me as I'm struggling with
this. I am using BioMart 0.8rc6 and MartConfigurator as part
of that. I have a db with 5 different datasets, all of which
have the same structure (one main table and one dm table). I
can use MartConfigurator with one dataset to create a working
mart for the main/dm table in that dataset, suggesting that
the structure is correct. However, if I try building a mart
on one of the main tables (with it's dimension table) and
request building it with a partition table causes a java null
pointer exception (MartController.java line 1315). Building
the same partition-based mart without the dm tables present
works.
Am really hoping somebody can point out what I'm doing wrong?
Many thanks.
Ellen.
--
[email protected]
<mailto:[email protected]>
JDRF/WT Diabetes and Inflammation Laboratory (DIL)
Cambridge Institute for Medical Research (CIMR)
Wellcome Trust/MRC Building
Addenbrooke's Hospital Hills Road Cambridge CB2 0XY
Tel: 01223 763215 <tel:01223%20763215>
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--
Arek Kasprzyk, MD, MSc, PhD
BioMart Project Lead
www.biomart.org <http://www.biomart.org>
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