Hi Syed With my RNAseq data analysis I received a file which looks at expression of individual exons of each gene. This means that the geneID are not all different (ie not 600k GeneID) but they come as a list with p values and I want to be able to convert the list to Gene name. It should eb a simple process but I can't seem to be able to find a way of doing it.
Let me know if you can help Best Hamid ________________________________________ From: Syed Haider [[email protected]] Sent: 26 February 2013 1:27 PM To: Arek Kasprzyk Cc: Hamid Dolatshad; [email protected] Subject: Re: [BioMart Users] gene ID list limit Hamid, just curious - how come you have 600K genes in human, you might want to run distinct/unique on your list? Syed On 26 February 2013 13:06, Arek Kasprzyk <[email protected]> wrote: > Hi Hamid, > have you tried the ID converter? > (http://central.biomart.org/converter/#!/ID_converter/gene_ensembl_config_2)? > > I dont' think this has a limit. > > You could also try to split your list into two chunks I suppose > > > a > > > > On Tue, Feb 26, 2013 at 12:39 PM, Hamid Dolatshad > <[email protected]> wrote: >> >> Hi >> I am trying to convert ensembl gene ID to HGNC symbol and the max that can >> be loaded to the site or the ensembl site is 500. my list is 600k list and >> it is in a specific order. I was wondering if anyone knows how to quickly >> convert the list to the HGNC symbol. >> Thanks >> Hamid >> >> >> >> _______________________________________________ >> Users mailing list >> [email protected] >> https://lists.biomart.org/mailman/listinfo/users >> > > > > > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users > _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
