I have done that, thank you . I suppose the other point is brining the data together. Do you have any idea on how to replace the GeneID in excel with the name? is there a simple formula to use?
________________________________________ From: Syed Haider [[email protected]] Sent: 26 February 2013 2:35 PM To: Hamid Dolatshad Cc: Arek Kasprzyk; [email protected] Subject: Re: [BioMart Users] gene ID list limit Go to Ensembl mart (Human), Select attributes: - Gene id (which ever system of IDs you have eg Entrez, Ensembl etc), - HGNC Symbol Hit Results, then "Export all results" to File ("TSV") with "Unique results option" and you have a mapping table of all the genes. No need to send large number of identifiers to BioMart. Syed On 26 February 2013 14:04, Hamid Dolatshad <[email protected]> wrote: > Hi Syed > With my RNAseq data analysis I received a file which looks at expression of > individual exons of each gene. This means that the geneID are not all > different (ie not 600k GeneID) but they come as a list with p values and I > want to be able to convert the list to Gene name. It should eb a simple > process but I can't seem to be able to find a way of doing it. > > Let me know if you can help > Best > Hamid > > ________________________________________ > From: Syed Haider [[email protected]] > Sent: 26 February 2013 1:27 PM > To: Arek Kasprzyk > Cc: Hamid Dolatshad; [email protected] > Subject: Re: [BioMart Users] gene ID list limit > > Hamid, > > just curious - how come you have 600K genes in human, you might want > to run distinct/unique on your list? > > Syed > > > On 26 February 2013 13:06, Arek Kasprzyk <[email protected]> wrote: >> Hi Hamid, >> have you tried the ID converter? >> (http://central.biomart.org/converter/#!/ID_converter/gene_ensembl_config_2)? >> >> I dont' think this has a limit. >> >> You could also try to split your list into two chunks I suppose >> >> >> a >> >> >> >> On Tue, Feb 26, 2013 at 12:39 PM, Hamid Dolatshad >> <[email protected]> wrote: >>> >>> Hi >>> I am trying to convert ensembl gene ID to HGNC symbol and the max that can >>> be loaded to the site or the ensembl site is 500. my list is 600k list and >>> it is in a specific order. I was wondering if anyone knows how to quickly >>> convert the list to the HGNC symbol. >>> Thanks >>> Hamid >>> >>> >>> >>> _______________________________________________ >>> Users mailing list >>> [email protected] >>> https://lists.biomart.org/mailman/listinfo/users >>> >> >> >> >> >> _______________________________________________ >> Users mailing list >> [email protected] >> https://lists.biomart.org/mailman/listinfo/users >> _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
