Thanks a lot !! Sorry this is my first time using Biomart. I also just figured out the output indeed gave me all 30 genes, although I did not expect that the order of the genes would be different. Any idea why in the BIOmart output some UC IDs are listed as blank? At genome.ucsc site, they all have corresponding UC IDs. I could spot-check all blank IDs this time, but I wonder what if I have a bigger list. Any fix?
Thank you again for the prompt response. Best, Brenden On Thu, Mar 14, 2013 at 7:05 PM, Syed Haider <[email protected]> wrote: > Hi Brenden, > > Just ran your 30 genes through ID convertor, and got the results back > (as enclosed). Running length(unique("HGNC symbol")) does show 30 > genes. Not sure if you got the same results as enclosed. > > Syed > > > > On 14 March 2013 21:51, Brenden Chen <[email protected]> wrote: > > To whom it may concern, > > > > There seems to be a technical glitch in ID converter and I am sending > this > > inquiry to seek assistance/clarification. > > I uploaded a list of 30 genes by their HGNC symbols and asked them to be > > converted into UCSC IDs. After clicking GO, a pop-up window showed up > with > > the conversion results. > > Problems > > 1. the conversion results in the pop-up window only includes 17 out of > the > > 30 genes submitted. > > 2. when I clicked on the download data, the downloaded data is > incomplete - > > including some from the 17 genes shown in the pop-up window, and some > from > > the 13 genes NOT shown in the pop-up window. > > > > Attached is the list of genes submitted. Any suggestion as to how I > should > > proceed will be appreciated. > > > > Thank you. > > Regards, > > Brenden Chen > > > > _______________________________________________ > > Users mailing list > > [email protected] > > https://lists.biomart.org/mailman/listinfo/users > > >
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