The missing UCSC IDs is a question for the data provider i-e Ensembl BioMart team in this case. Rhoda Kinsella (cc'ed) here can hopefully help you with this.
Syed On 14 March 2013 23:21, Brenden Chen <[email protected]> wrote: > Thanks a lot !! Sorry this is my first time using Biomart. > I also just figured out the output indeed gave me all 30 genes, although I > did not expect that the order of the genes would be different. > Any idea why in the BIOmart output some UC IDs are listed as blank? At > genome.ucsc site, they all have corresponding UC IDs. I could spot-check all > blank IDs this time, but I wonder what if I have a bigger list. Any fix? > > Thank you again for the prompt response. > Best, > Brenden > > > On Thu, Mar 14, 2013 at 7:05 PM, Syed Haider <[email protected]> wrote: >> >> Hi Brenden, >> >> Just ran your 30 genes through ID convertor, and got the results back >> (as enclosed). Running length(unique("HGNC symbol")) does show 30 >> genes. Not sure if you got the same results as enclosed. >> >> Syed >> >> >> >> On 14 March 2013 21:51, Brenden Chen <[email protected]> wrote: >> > To whom it may concern, >> > >> > There seems to be a technical glitch in ID converter and I am sending >> > this >> > inquiry to seek assistance/clarification. >> > I uploaded a list of 30 genes by their HGNC symbols and asked them to be >> > converted into UCSC IDs. After clicking GO, a pop-up window showed up >> > with >> > the conversion results. >> > Problems >> > 1. the conversion results in the pop-up window only includes 17 out of >> > the >> > 30 genes submitted. >> > 2. when I clicked on the download data, the downloaded data is >> > incomplete - >> > including some from the 17 genes shown in the pop-up window, and some >> > from >> > the 13 genes NOT shown in the pop-up window. >> > >> > Attached is the list of genes submitted. Any suggestion as to how I >> > should >> > proceed will be appreciated. >> > >> > Thank you. >> > Regards, >> > Brenden Chen >> > >> > _______________________________________________ >> > Users mailing list >> > [email protected] >> > https://lists.biomart.org/mailman/listinfo/users >> > > > _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
