Hi, I am trying to get Reactome pathway IDs from a given Reactome reaction ID - i.e. any pathways in which the reaction might be involved - but get unexpected results.
We use the biomart web service, which returns no results at all for REACT_1524 (pyruvate kinase). I expect to get at least REACT_1383 (glycolysis). On the other hand, the same query issued from the web front end gives me a message "Error has occurred". The bookmark of the query is this: http://central.biomart.org/martwizard/#!/Interaction_and_pathways?mart=Reactome+(OICR%2C+Canada%3B+EBI%2C+UK%3B+NYU+Medical+Center%2C+USA)&datasets=pathway&step=4&id_list_filters%5B%5D=reaction_id_list&id_list_filters%5B%5D=REACT_1524&id_list_filters%5B%5D=Reaction+stable+ID(s)+(e.g.+REACT_533)&attributes=stableidentifier_identifier%2C_displayname The XML sent in the query is this: <!DOCTYPE Query><Query client="true" processor="TSV" limit="-1" header="1"><Dataset name="pathway" config="pathway_config"><Filter name="reaction_id_list" value="REACT_1524"/><Attribute name="stableidentifier_identifier"/><Attribute name="_displayname"/></Dataset></Query> Any help is much appreciated. Thanks! -- Dr. Rafael Alcántara <[email protected]> Software Engineer Cheminformatics and Metabolism Team European Bioinformatics Institute - EMBL Tel. +44 (0)1223 494414 _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
