Hi Raffael, The Reactome mart has been recently offline. I am cc'ing Robin Haw who runs this project. Robin, do you know if/when this service going to be restored?
cheers, a On 20 May 2013 17:19, Rafael Alcántara <[email protected]> wrote: > Hi, > > I am trying to get Reactome pathway IDs from a given Reactome reaction > ID - i.e. any pathways in which the reaction might be involved - but get > unexpected results. > > We use the biomart web service, which returns no results at all for > REACT_1524 (pyruvate kinase). I expect to get at least REACT_1383 > (glycolysis). > > On the other hand, the same query issued from the web front end gives me > a message "Error has occurred". The bookmark of the query is this: > > > http://central.biomart.org/martwizard/#!/Interaction_and_pathways?mart=Reactome+(OICR%2C+Canada%3B+EBI%2C+UK%3B+NYU+Medical+Center%2C+USA)&datasets=pathway&step=4&id_list_filters%5B%5D=reaction_id_list&id_list_filters%5B%5D=REACT_1524&id_list_filters%5B%5D=Reaction+stable+ID(s)+(e.g.+REACT_533)&attributes=stableidentifier_identifier%2C_displayname > > The XML sent in the query is this: > <!DOCTYPE Query><Query client="true" processor="TSV" limit="-1" > header="1"><Dataset name="pathway" config="pathway_config"><Filter > name="reaction_id_list" value="REACT_1524"/><Attribute > name="stableidentifier_identifier"/><Attribute > name="_displayname"/></Dataset></Query> > > Any help is much appreciated. Thanks! > > -- > Dr. Rafael Alcántara > <[email protected]> > Software Engineer > Cheminformatics and Metabolism Team > European Bioinformatics Institute - EMBL > Tel. +44 (0)1223 494414 > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users >
_______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
