Hi Rashad, I recognise this error. please update your local repo and do a clean ant build. I just added the missing linkindices file to the github repo.
a On 23 May 2013 20:36, El-Badrawi Rachad <[email protected]>wrote: > Sorry, I stand corrected. The error I am receiving with a new clean > installation is: > BUILD FAILED > (My biomart path)/biomart-rc6/build.xml:137: (My biomart > path)/biomart-rc6/registry/linkindices does not exist. > > The file does exist, and even opening up permissions on files for all does > not help. > > From: El-Badrawi Rachad <[email protected]<mailto: > [email protected]>> > Date: Thursday, 23 May, 2013 3:23 PM > Cc: "[email protected]<mailto:[email protected]>" <[email protected] > <mailto:[email protected]>> > Subject: Re: [BioMart Users] Biomart on Mountain Lion > > Hi Arek, > > Thanks for the feedback. Its strange as all was going well. I still > suspect the update to the latest Mac command line tools caused something. I > am running OS X version 10.8.3, but I do not think that is relevant. > > Regards. > > From: Arek Kasprzyk <[email protected]<mailto: > [email protected]>> > Date: Thursday, 23 May, 2013 2:38 PM > To: El-Badrawi Rachad <[email protected]<mailto: > [email protected]>> > Cc: "[email protected]<mailto:[email protected]>" <[email protected] > <mailto:[email protected]>>, "Rashad B." <[email protected]<mailto: > [email protected]>> > Subject: Re: [BioMart Users] Biomart on Mountain Lion > > Hi Rashad, > I have just checked again on my Mac OS X Lion 10.7.5 and it built without > problems. I don't think rc6 was ever tested on Mountain Lion so perhaps > somebody else would be able to add something more helpful here > > a > > > On 22 May 2013 18:17, El-Badrawi Rachad <[email protected] > <mailto:[email protected]>> wrote: > Hi, > > In case anyone is familiar with running Biomart on mac: > > I have been using Biomart on my Mountain Lion with no problems, benefiting > from the mac command line tools package, until I updated the command line > tools to the latest version. My understanding is that upon doing that, I > had to re-build my Biomart installation using ant. However, this did not > work, and the build process fails with the following errors: > BUILD FAILED > /Users/elbadr/ElbadrFiles/IRCM/DrugNet/Biomart/release-0_8-candidate_6/build.xml:196: > IOException in > /Users/elbadr/ElbadrFiles/IRCM/DrugNet/Biomart/release-0_8-candidate_6/dist/web/webapps/martapps/_js_includes.jsp > - java.io.IOException: > Failed to delete > /Users/elbadr/ElbadrFiles/IRCM/DrugNet/Biomart/release-0_8-candidate_6/dist/web/webapps/martapps/_js_includes.jsp > while trying to rename > /Users/elbadr/ElbadrFiles/IRCM/DrugNet/Biomart/release-0_8-candidate_6/dist/web/webapps/martapps/rep5565059420460101763.tmp > > There is no such file, though. This happens at the end of the Build > process, and obviously, when running the martconfigurator, it cannot find > the classes it needs. > > Regards, > Rashad > _______________________________________________ > Users mailing list > [email protected]<mailto:[email protected]> > https://lists.biomart.org/mailman/listinfo/users > > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users >
_______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
