I tried this on another cluster and got the results below. I didn’t use simfactory on it either.
-DG > On Mar 20, 2018, at 11:47 AM, Roland Haas <[email protected]> > wrote: > > Hello DG, > > it could be that something failed while MPI was compiled. Would you mind > attaching the following files from inside of your Cactus tree, please? > > configs/sim/bindings/Configuration/Capabilities/make.MPI.defn INC_DIRS += $(MPI_INC_DIRS) INC_DIRS_F += $(MPI_LIB_DIRS) MPI_BUILD = 1 MPI_INSTALL_DIR = HWLOC_DIR = CCTK_MPI = 1 MPI_DIR = /home/garrison/Cactus/configs/fixedmhd/scratch/external/MPI MPI_INC_DIRS = /home/garrison/Cactus/configs/fixedmhd/scratch/external/MPI/include MPI_LIB_DIRS = /home/garrison/Cactus/configs/fixedmhd/scratch/external/MPI/lib MPI_LIBS = mpi_usempif08 mpi_usempi_ignore_tkr mpi_mpifh mpi_cxx mpi open-rte open-pal rt util HAVE_CAPABILITY_MPI = 1 > configs/sim/bindings/Configuration/Capabilities/make.HDF5.defn include /home/garrison/Cactus/configs/fixedmhd/bindings/Configuration/Capabilities/make.MPI.defn include /home/garrison/Cactus/configs/fixedmhd/bindings/Configuration/Capabilities/make.ZLIB.defn INC_DIRS += $(HDF5_INC_DIRS) INC_DIRS_F += $(HDF5_INC_DIRS) HDF5_BUILD = 1 HDF5_ENABLE_CXX = no HDF5_ENABLE_FORTRAN = yes LIBSZ_DIR = LIBZ_DIR = HDF5_INSTALL_DIR = HDF5_DIR = /home/garrison/Cactus/configs/fixedmhd/scratch/external/HDF5 HDF5_ENABLE_CXX = no HDF5_ENABLE_FORTRAN = yes HDF5_INC_DIRS = /home/garrison/Cactus/configs/fixedmhd/scratch/external/HDF5/lib /home/garrison/Cactus/configs/fixedmhd/scratch/external/HDF5/include /home/garrison/Cactus/configs/fixedmh d/scratch/external/HDF5/lib HDF5_LIB_DIRS = /home/garrison/Cactus/configs/fixedmhd/scratch/external/HDF5/lib HDF5_LIBS = hdf5hl_fortran hdf5_fortran hdf5_hl hdf5 m z HAVE_CAPABILITY_HDF5 = 1 > > configs/sim/bindings/Configuration/Capabilities/make.HDF5.deps include /home/garrison/Cactus/configs/fixedmhd/bindings/Configuration/Capabilities/make.MPI.deps include /home/garrison/Cactus/configs/fixedmhd/bindings/Configuration/Capabilities/make.ZLIB.deps > > as well as > > confis/sim/config-info (as well as the option list that you used)? # CONFIGURATION : fixedmhd # CONFIG-DATE : Sun Mar 18 02:24:53 2018 (GMT) # CONFIG-HOST : singularity.cluster.internal # CONFIG-STATUS : 0 # CONFIG-OPTIONS : MPI_DIR=BUILD > > If possible also the full output of: > > export VERBOSE=yes > simfactory/bin/sim build 2>&1 | tee make.log > > or > > export VERBOSE=yes > make sim 2>&1 | tee make.log > > (depending on whether you used simfactory or not), please? > > Yours, > Roland > >> Hello, >> >> Every time I try to compile my code I get the following error. >> >> COMPILING arrangements/CactusPUGHIO/IOHDF5Util/src/Startup.c >> /share/apps/hdf5-1.8.12/include/H5public.h(61): catastrophic error: cannot >> open source file "mpi.h" >> # include <mpi.h> >> >> This is new as of the most recent versions of Cactus. Previous compilations >> of the same code on the same cluster did not result in this error. Any help >> is appreciated. >> >> I used the config option: MPI_DIR = BUILD >> >> -DG >> >> Sent from my iPhone >> _______________________________________________ >> Users mailing list >> [email protected] >> http://lists.einsteintoolkit.org/mailman/listinfo/users > > > Yours, > Roland > > > -- > My email is as private as my paper mail. I therefore support encrypting > and signing email messages. Get my PGP key from http://pgp.mit.edu .
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