I delete the aimk.private file that was causing the "-I/usr/local/BerkeleyDB.4.4/include//usr/local/BerkeleyDB.4.4/include" to show up in the compile statement and I add the home location into the aimk.site "/usr/local/BerkeleyDB.4.4"
I also delete the newer version of Berkeley DB from under the /usr/local directory. Nevertheless, I am still getting this error _________C_O_R_E__S_Y_S_T_E_M_____________ cc -DSGE_ARCH_STRING=\"sol-amd64\" -Xc -v -fast -xchip=generic -xcache=generic -xarch=sse2 -m64 -ftrap=division -D_LARGEFILE64_SOURCE=1 -DHAS_SOCKLEN_T -DLOAD_OPENSSL -I/usr/local/Berkeley.4.4/include/ -DTARGET_64BIT -DSPOOLING_dynamic -DSECURE -I/usr/include/openssl/include -DSOLARIS -DSOLARISAMD64 -D__EXTENSIONS__ -D_POSIX_C_SOURCE=199506L -DGETHOSTBYNAME_R5 -DGETHOSTBYADDR_R7 -DUSE_POLL -errwarn=%all -DCOMPILE_DC -D__SGE_COMPILE_WITH_GETTEXT__ -D__SGE_NO_USERMAPPING__ -DTHREADBINDING -DHWLOC -I../common -I../libs -I../libs/uti -I../libs/juti -I../libs/gdi -I../libs/japi -I../libs/sgeobj -I../libs/cull -I../libs/rmon -I../libs/comm -I../libs/comm/lists -I../libs/sched -I../libs/evc -I../libs/evm -I../libs/mir -I../libs/lck -I../daemons/common -I../daemons/qmaster -I../daemons/execd -I../daemons/schedd -I../clients/common -I. -I/usr/jdk/instances/jdk1.6.0/include -I/usr/jdk/instances/jdk1.6.0/include/solaris -I/usr/include -I/usr/include/solaris -I/root/GE2011.11/source/3rdparty/hwloc/hwloc-1.2.2/include/ -I/root/GE2011.11/source/3rdparty/hwloc/hwloc-1.2.2/SOLARISAMD64/include -KPIC -c ../libs/spool/berkeleydb/sge_bdb.c "../libs/spool/berkeleydb/sge_bdb.c", line 207: undefined symbol: DB_RPCCLIENT "../libs/spool/berkeleydb/sge_bdb.c", line 271: undefined struct/union member: set_rpc_server "../libs/spool/berkeleydb/sge_bdb.c", line 271: function designator is not of function type "../libs/spool/berkeleydb/sge_bdb.c", line 271: improper pointer/integer combination: op "=" "../libs/spool/berkeleydb/sge_bdb.c", line 329: cannot recover from previous errors cc: acomp failed for ../libs/spool/berkeleydb/sge_bdb.c *** Error code 2 make: Fatal error: Command failed for target `sge_bdb.o' not done Do I really need the database? This is my first time to try to install the grid engine any place. John -----Original Message----- From: Rayson Ho [mailto:[email protected]] Sent: Wednesday, December 21, 2011 12:11 PM To: Geilow, John Cc: [email protected] Subject: Re: [EXTERNAL] Re: [gridengine users] Problem compiling Grid engine on Solaris May be an issue with your aimk.site? Your compile command shows: "-I/usr/local/BerkeleyDB.4.4/include//usr/local/BerkeleyDB.4.4/include". If the compiler can't find the header file in the "/usr/local/BerkeleyDB.4.4/include//usr/local/BerkeleyDB.4.4/include" directory, then it would pick up the default one, which is likely to be a newer version than 4.4.20. Rayson On Wed, Dec 21, 2011 at 2:02 PM, Geilow, John <[email protected]> wrote: > I try DB 4.4.20 and still the same problem > > _________C_O_R_E__S_Y_S_T_E_M_____________ > cc -DSGE_ARCH_STRING=\"sol-amd64\" -Xc -v -fast -xchip=generic > -xcache=generic -xarch=sse2 -m64 -ftrap=division > -D_LARGEFILE64_SOURCE=1 -DHAS_SOCKLEN_T -DLOAD_OPENSSL > -I/usr/local/BerkeleyDB.4.4/include//usr/local/BerkeleyDB.4.4/include > -DTARGET_64BIT -DSPOOLING_dynamic -DSECURE > -I/usr/include/openssl/include -DSOLARIS -DSOLARISAMD64 > -D__EXTENSIONS__ -D_POSIX_C_SOURCE=199506L -DGETHOSTBYNAME_R5 > -DGETHOSTBYADDR_R7 -DUSE_POLL -errwarn=%all -DCOMPILE_DC > -D__SGE_COMPILE_WITH_GETTEXT__ -D__SGE_NO_USERMAPPING__ > -DTHREADBINDING -DHWLOC -I../common -I../libs -I../libs/uti > -I../libs/juti -I../libs/gdi -I../libs/japi -I../libs/sgeobj > -I../libs/cull -I../libs/rmon -I../libs/comm -I../libs/comm/lists > -I../libs/sched -I../libs/evc -I../libs/evm -I../libs/mir > -I../libs/lck -I../daemons/common -I../daemons/qmaster > -I../daemons/execd -I../daemons/schedd -I../clients/common -I. > -I/usr/jdk/instances/jdk1.6.0/include > -I/usr/jdk/instances/jdk1.6.0/include/solaris > -I/usr/jdk/jdk1.6.0_26/jre/include > -I/usr/jdk/jdk1.6.0_26/jre/include/solaris > -I/root/GE2011.11/source/3rdparty/hwloc/hwloc-1.2.2/include/ > -I/root/GE2011.11/source/3rdparty/hwloc/hwloc-1.2.2/SOLARISAMD64/inclu > de -KPIC -c ../libs/spool/berkeleydb/sge_bdb.c > "../libs/spool/berkeleydb/sge_bdb.c", line 207: undefined symbol: > DB_RPCCLIENT "../libs/spool/berkeleydb/sge_bdb.c", line 271: undefined > struct/union member: set_rpc_server > "../libs/spool/berkeleydb/sge_bdb.c", line 271: function designator is not of > function type "../libs/spool/berkeleydb/sge_bdb.c", line 271: improper > pointer/integer combination: op "=" > "../libs/spool/berkeleydb/sge_bdb.c", line 329: cannot recover from > previous errors > cc: acomp failed for ../libs/spool/berkeleydb/sge_bdb.c > *** Error code 2 > make: Fatal error: Command failed for target `sge_bdb.o' > not done > > > Am I missing something in the environment? > > John > > -----Original Message----- > From: Rayson Ho [mailto:[email protected]] > Sent: Wednesday, December 21, 2011 11:37 AM > To: Geilow, John > Cc: [email protected] > Subject: Re: [EXTERNAL] Re: [gridengine users] Problem compiling Grid > engine on Solaris > > On Wed, Dec 21, 2011 at 1:23 PM, Geilow, John <[email protected]> wrote: >> Now it stop at this > > Please download Berkeley DB 4.4.20: > > http://www.oracle.com/technetwork/database/berkeleydb/downloads/index- > 082944.html > > Newer versions of Berkeley DB don't support the RPC Client/Server model, but > older versions of SGE are linked with Berkeley DB 4.4.20, and thus the > on-disk data format is saved in the Berkeley DB 4.4.20 format. And the > complicated part is that newer Berkeley DB do not support the on-disk data > used by older versions (will need to migrate the data with dump-restore), so > in order for SGE to be compatible with older versions (such that we can read > back the older jobs & sge configuration data), we currently need Berkeley DB > 4.4.20. > > Of course, if you are doing a fresh install, then it is not a concern. > > Rayson > > > >> cc -DSGE_ARCH_STRING=\"sol-amd64\" -Xc -v -fast -xchip=generic >> -xcache=generic -xarch=sse2 -m64 -ftrap=division >> -D_LARGEFILE64_SOURCE=1 -DHAS_SOCKLEN_T -DLOAD_OPENSSL >> -I/usr/local/BerkeleyDB.5.2/include//usr/local/BerkeleyDB.5.2/include >> -DTARGET_64BIT -DSPOOLING_dynamic -DSECURE >> -I/usr/include/openssl/include -DSOLARIS -DSOLARISAMD64 >> -D__EXTENSIONS__ -D_POSIX_C_SOURCE=199506L -DGETHOSTBYNAME_R5 >> -DGETHOSTBYADDR_R7 -DUSE_POLL -errwarn=%all -DCOMPILE_DC >> -D__SGE_COMPILE_WITH_GETTEXT__ -D__SGE_NO_USERMAPPING__ >> -DTHREADBINDING -DHWLOC -I../common -I../libs -I../libs/uti >> -I../libs/juti -I../libs/gdi -I../libs/japi -I../libs/sgeobj >> -I../libs/cull -I../libs/rmon -I../libs/comm -I../libs/comm/lists >> -I../libs/sched -I../libs/evc -I../libs/evm -I../libs/mir >> -I../libs/lck -I../daemons/common -I../daemons/qmaster >> -I../daemons/execd -I../daemons/schedd -I../clients/common -I. >> -I/usr/jdk/instances/jdk1.6.0/include >> -I/usr/jdk/instances/jdk1.6.0/include/solaris >> -I/usr/jdk/jdk1.6.0_26/jre/include >> -I/usr/jdk/jdk1.6.0_26/jre/include/solaris >> -I/root/GE2011.11/source/3rdparty/hwloc/hwloc-1.2.2/include/ >> -I/root/GE2011.11/source/3rdparty/hwloc/hwloc-1.2.2/SOLARISAMD64/incl >> u de -KPIC -c ../libs/spool/berkeleydb/sge_bdb.c >> "../libs/spool/berkeleydb/sge_bdb.c", line 207: undefined symbol: >> DB_RPCCLIENT "../libs/spool/berkeleydb/sge_bdb.c", line 271: >> undefined struct/union member: set_rpc_server >> "../libs/spool/berkeleydb/sge_bdb.c", line 271: function designator is not >> of function type "../libs/spool/berkeleydb/sge_bdb.c", line 271: improper >> pointer/integer combination: op "=" >> "../libs/spool/berkeleydb/sge_bdb.c", line 329: cannot recover from >> previous errors >> cc: acomp failed for ../libs/spool/berkeleydb/sge_bdb.c >> *** Error code 2 >> make: Fatal error: Command failed for target `sge_bdb.o' >> not done >> >> -----Original Message----- >> From: Jesse Becker [mailto:[email protected]] >> Sent: Wednesday, December 21, 2011 11:13 AM >> To: Rayson Ho >> Cc: Geilow, John; [email protected] >> Subject: [EXTERNAL] Re: [gridengine users] Problem compiling Grid >> engine on Solaris >> >> I actually just ran into this problem recently on a Fedora 15 box. >> >> The problem, as I understand it, is that openssl 1.0.0 deprecates "STACK" in >> favor of "STACK_OF". However, I don't think that it is a drop-in >> replacement (I've not looked deeply into this though). You can use >> "_STACK", and I that fixes this particular compile issue. >> >> Older versions of openssl do not have this problem. >> >> >> On Wed, Dec 21, 2011 at 12:55:04PM -0500, Rayson Ho wrote: >>>Hi John, >>> >>>Looks like your SSL library defines "_STACK" instead of "STACK". Can >>>you change "STACK" to "_STACK" on line 238, 239, 1703, 1710 etc and >>>see if it compiles?? >>> >>>I recall some versions of SSL library caused this issue, and if >>>changing "STACK" to "_STACK" does not work, then please let me know >>>the version of your SSL library and I will try to reproduce it on my >>>machines. >>> >>>Rayson >>> >>> >>> >>>On Wed, Dec 21, 2011 at 12:35 PM, Geilow, John <[email protected]> wrote: >>>> Hi, >>>> >>>> I try to compile and I am running into a problem I cannot figure out. >>>> I have already work through 4 other issues, but this one I do not >>>> understand what need to be change in the file. >>>> >>>> Here is the error. >>>> cc -DSGE_ARCH_STRING=\"sol-amd64\" -Xc -v -fast -xchip=generic >>>> -xcache=generic -xarch=sse2 -m64 -ftrap=division >>>> -D_LARGEFILE64_SOURCE=1 -DHAS_SOCKLEN_T -DLOAD_OPENSSL >>>> -I/usr/local/BerkeleyDB.5.2/include//usr/local/BerkeleyDB.5.2/inclu >>>> d e -DTARGET_64BIT -DSPOOLING_dynamic -DSECURE >>>> -I/usr/include/openssl/include -DSOLARIS -DSOLARISAMD64 >>>> -D__EXTENSIONS__ -D_POSIX_C_SOURCE=199506L >>>> -DGETHOSTBYNAME_R5 -DGETHOSTBYADDR_R7 -DUSE_POLL -errwarn=%all >>>> -DCOMPILE_DC -D__SGE_COMPILE_WITH_GETTEXT__ >>>> -D__SGE_NO_USERMAPPING__ -DTHREADBINDING -DHWLOC -I../common >>>> -I../libs -I../libs/uti -I../libs/juti -I../libs/gdi -I../libs/japi >>>> -I../libs/sgeobj -I../libs/cull -I../libs/rmon -I../libs/comm >>>> -I../libs/comm/lists -I../libs/sched -I../libs/evc -I../libs/evm >>>> -I../libs/mir -I../libs/lck -I../daemons/common -I../daemons/qmaster >>>> -I../daemons/execd -I../daemons/schedd -I../clients/common -I. >>>> -I/usr/jdk/instances/jdk1.6.0/include >>>> -I/usr/jdk/instances/jdk1.6.0/include/solaris >>>> -I/usr/jdk/jdk1.6.0_26/jre/include >>>> -I/usr/jdk/jdk1.6.0_26/jre/include/solaris >>>> -I/root/GE2011.11/source/3rdparty/hwloc/hwloc-1.2.2/include/ >>>> -I/root/GE2011.11/source/3rdparty/hwloc/hwloc-1.2.2/SOLARISAMD64/in >>>> c l ude -KPIC -c ../libs/comm/cl_ssl_framework.c >>>> "../libs/comm/cl_ssl_framework.c", line 238: no explicit type given >>>> "../libs/comm/cl_ssl_framework.c", line 238: syntax error before or >>>> at: * "../libs/comm/cl_ssl_framework.c", line 239: no explicit type >>>> given "../libs/comm/cl_ssl_framework.c", line 239: syntax error >>>> before or at: * "../libs/comm/cl_ssl_framework.c", line 239: undefined or >>>> missing type for: >>>> int >>>> "../libs/comm/cl_ssl_framework.c", line 1703: no explicit type >>>> given "../libs/comm/cl_ssl_framework.c", line 1703: syntax error >>>> before or >>>> at: * "../libs/comm/cl_ssl_framework.c", line 1710: no explicit >>>> type given "../libs/comm/cl_ssl_framework.c", line 1710: syntax >>>> error before or at: * "../libs/comm/cl_ssl_framework.c", line 1950: >>>> only "register" valid as formal parameter storage class >>>> "../libs/comm/cl_ssl_framework.c", line 1950: cannot recover from >>>> previous errors >>>> cc: acomp failed for ../libs/comm/cl_ssl_framework.c >>>> *** Error code 2 >>>> make: Fatal error: Command failed for target `cl_ssl_framework.o' >>>> not done >>>> >>>> If someone could point to the fix, I would really appreciate. >>>> >>>> John >>>> >>>> >>>> _______________________________________________ >>>> users mailing list >>>> [email protected] >>>> https://gridengine.org/mailman/listinfo/users >>>> >>> >>>_______________________________________________ >>>users mailing list >>>[email protected] >>>https://gridengine.org/mailman/listinfo/users >> >> -- >> Jesse Becker >> NHGRI Linux support (Digicon Contractor) >> >> > > _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
