I checked the PE-job and the job-arrays and they had none.
I originally setup all my queues with a large h_rt value thinking that jobs
would inherit that:
# qconf -sq bio | fgrep h_rt
h_rt 9999:00:00
But I think I read wrong how that worked.
What is the proper / recommend way to setup a default h_rt value so that jobs
will inherit if none is specified and so that job_arrays will not keep PE jobs
from running?
Joseph
On 08/13/2012 12:33 PM, Reuti wrote:
What walltime (i.e. h_rt) for the jobs did you request?
-- Reuti
Am 13.08.2012 um 21:17 schrieb Joseph Farran<[email protected]>:
Hi.
We are having the classical job starvation with PE jobs.
I followed the instructions listed at
http://www.gridengine.info/2006/05/31/resource-reservation-prevents-parallel-job-starvation
# qconf -ssconf | egrep reservation
max_reservation 64
# qconf -sconf | grep reservations
max_advance_reservations 64
Here is a sample Queue listing:
job-ID prior name user state submit/start at ots ja-task-ID
--------------------------------------------------------------------------------
2427 0.56811 blat_redi userb qw 08/13/2012 11:24:54 10
2415 0.50500 test_run6c usera qw 08/13/2012 10:26:16 1 138-250:1
2416 0.50500 test_run6e usera qw 08/13/2012 10:26:16 1 1-250:1
2417 0.50500 test_run6f usera qw 08/13/2012 10:26:17 1 1-250:1
2418 0.50500 test_run6g usera qw 08/13/2012 10:26:17 1 1-250:1
2419 0.50500 test_run6h usera qw 08/13/2012 10:26:17 1 1-250:1
2420 0.50500 test_run6i usera qw 08/13/2012 10:26:17 1 1-250:1
2421 0.50500 test_run6j usera qw 08/13/2012 10:26:17 1 1-250:1
2428 0.50500 test_run6. usera qw 08/13/2012 11:38:43 1 1-250:1
Job #2427 has the Reservation flag turned on:
# qstat -F -j 2427 | grep reserve
reserve: y
However, the job arrays under job #2427 keep PE job #2427 from running.
What other settings do I need to check for to fix this?
I am suing binary GE2011.11
Thanks,
Joseph
_______________________________________________
users mailing list
[email protected]
https://gridengine.org/mailman/listinfo/users
_______________________________________________
users mailing list
[email protected]
https://gridengine.org/mailman/listinfo/users
