I am having issues with a parallel environment and a queue. I posted this
issue before a few weeks ago. When I submit the job it never gets past qw.
I am using GE 6.2u5. I am suing a submission script. Here is part of the
script.
!/bin/bash
#$ -S /bin/bash
#$ -l gaussian=1
#$ -l mem_free=$memFree
#$ -o $myScript.stdout
#$ -e $myScript.stderr
#$ -pe gauss $nProc
#$ -wd `pwd`
#$ -m bea
#$ -M $USER@
#$ -q $myQueue
Here is the message I get when I run qstat -j.
Jobs can not run because queue instance is not contained in its hard queue
list
350
Jobs can not run because available slots combined under PE are not in range
of job.
When I run qalter with the -w v and -w p options, I get the following.
Job 350 cannot run in PE "gauss" because it only offers 0 slots
verification: no suitable queues
I have checked the queue I am submitting the job to and host and listed in
the queue. The number of slots is the queue seems to be correct. I do not
have any slot limits defined.
Here is the configuration of the parallel environment.
qconf -sp gauss
pe_name gauss
slots 999
user_lists NONE
xuser_lists NONE
start_proc_args /bin/true
stop_proc_args /bin/true
allocation_rule $fill_up
control_slaves FALSE
job_is_first_task FALSE
urgency_slots min
accounting_summary TRUE
Thanks,
Eric
--
Eric Kaufmann | Application Support Analyst - Advanced Technology Group |
Saint Louis University | 314-977-2257 | [email protected]
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