That was a typo in pasting the script. Column 1 is not blank. I tried escaping the charecter. Which results in this.
#!/bin/bash #$ -N zzzz #$ -cwd #$ -o /home/user1/work/output/\$TASK_ID.out #$ -e /home/user1/work/output/\$TASK_ID.err #$ -t 1:10 date hostname sleep 100 qstat -j jobid | grep stdout stdout_path_list: NONE:NONE:/home/user1/work/output/\$TASK_ID.o With out escaping the $ #!/bin/bash #$ -N zzzz #$ -cwd #$ -o /home/user1/work/output/$TASK_ID.out #$ -e /home/user1/work/output/$TASK_ID.err #$ -t 1:10 date hostname sleep 100 qstat -j jobid | grep stdout qstat -j jobid | grep stdout stdout_path_list: NONE:NONE:/home/user1/work/3.o Not sure what i am missing. Rangam On Sat, Jan 18, 2014 at 3:01 PM, Reuti <[email protected]> wrote: > Am 18.01.2014 um 19:40 schrieb Srirangam Addepalli: > > > Hello Reuti, > > Yes this is correct. Output is being removed. > > >> It's not replaced, but removed - or? I mean the "output" is missing > here. The reason i suspect it is a substitution is when i try to run the > same using this script but with using the -cwd is that the output files do > get generated but with the name $TASK_ID.out and > > $TASK_ID.err in the output directory. > > > > #!/bin/bash > > #$ -N zzzz > > #$ -cwd > > #$ -o /home/user1/work/output/$TASK_ID.out > > #$ -e /home/user1/work/output/$TASK_ID.err > > #$ -t 1:1 > > Due to the blank in column 1 this is not honored as an SGE directive and > so not as an array job. For non-array jobs $TASK_ID is not substituted. > > -- Reuti > > > > date > > hostname > > sleep 100 > > > > stdout_path_list: NONE:NONE:/home/user1/work/output/$TASK_ID.o > > > > Rangam > > > > > > On Sat, Jan 18, 2014 at 9:46 AM, Reuti <[email protected]> > wrote: > > Hi, > > > > Am 18.01.2014 um 06:14 schrieb Srirangam Addepalli: > > > > > I see a strange problem with using OGS/GE 2011.11p1. It appears that > sge_execd is unable to get TASK_ID > > > > > > Following job submission script that is being used. > > > > > > #!/bin/bash > > > #$ -N zzzz > > > #$ -o /home/user1/work/output/$TASK_ID.out > > > #$ -e /home/user1/work/output/$TASK_ID.err > > > #$ -t 1:1 > > > date > > > hostname > > > sleep 100 > > > > > > How ever the output is generated in /home/user1/work/.Looking at the > log files in active_jobs config file looks like this > > > > > > config:stdout_path=/home/user1/work//1.o > > > config:stderr_path=/home/user1/work//1.err > > > > > > I appears that the $ somehow is replacing the last subdirectory > because of some substitution or some sort of aliases. > > > > It's not replaced, but removed - or? I mean the "output" is missing here. > > > > > > > I do not have any sge_aliases other than the default ones. Any > suggestions. > > > > They are only honored in case you use the option -cwd and targets the > start directory for the job, not the given paths to the -o/-e options. > > > > I never used OGS and I can't reproduce it with other variants. I assume > the output of `qstat -j <job_id>` shows the same false entry? > > > > -- Reuti > > > >
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