Am 19.01.2014 um 01:56 schrieb Srirangam Addepalli: > That was a typo in pasting the script. Column 1 is not blank. I tried > escaping the charecter. > Which results in this. > > #!/bin/bash > #$ -N zzzz > #$ -cwd > #$ -o /home/user1/work/output/\$TASK_ID.out > #$ -e /home/user1/work/output/\$TASK_ID.err > #$ -t 1:10 > date > hostname > sleep 100 > > qstat -j jobid | grep stdout > > stdout_path_list: NONE:NONE:/home/user1/work/output/\$TASK_ID.o
Do you have any JSV listed in `qconf -sconf` line "jsv_url"? -- Reuti > With out escaping the $ > > #!/bin/bash > #$ -N zzzz > #$ -cwd > #$ -o /home/user1/work/output/$TASK_ID.out > #$ -e /home/user1/work/output/$TASK_ID.err > #$ -t 1:10 > date > hostname > sleep 100 > > qstat -j jobid | grep stdout > > qstat -j jobid | grep stdout > > stdout_path_list: NONE:NONE:/home/user1/work/3.o > > Not sure what i am missing. > > Rangam > > > > On Sat, Jan 18, 2014 at 3:01 PM, Reuti <[email protected]> wrote: > Am 18.01.2014 um 19:40 schrieb Srirangam Addepalli: > > > Hello Reuti, > > Yes this is correct. Output is being removed. > > >> It's not replaced, but removed - or? I mean the "output" is missing > > >> here. The reason i suspect it is a substitution is when i try to run > > >> the same using this script but with using the -cwd is that the output > > >> files do get generated but with the name $TASK_ID.out and > > $TASK_ID.err in the output directory. > > > > #!/bin/bash > > #$ -N zzzz > > #$ -cwd > > #$ -o /home/user1/work/output/$TASK_ID.out > > #$ -e /home/user1/work/output/$TASK_ID.err > > #$ -t 1:1 > > Due to the blank in column 1 this is not honored as an SGE directive and so > not as an array job. For non-array jobs $TASK_ID is not substituted. > > -- Reuti > > > > date > > hostname > > sleep 100 > > > > stdout_path_list: NONE:NONE:/home/user1/work/output/$TASK_ID.o > > > > Rangam > > > > > > On Sat, Jan 18, 2014 at 9:46 AM, Reuti <[email protected]> wrote: > > Hi, > > > > Am 18.01.2014 um 06:14 schrieb Srirangam Addepalli: > > > > > I see a strange problem with using OGS/GE 2011.11p1. It appears that > > > sge_execd is unable to get TASK_ID > > > > > > Following job submission script that is being used. > > > > > > #!/bin/bash > > > #$ -N zzzz > > > #$ -o /home/user1/work/output/$TASK_ID.out > > > #$ -e /home/user1/work/output/$TASK_ID.err > > > #$ -t 1:1 > > > date > > > hostname > > > sleep 100 > > > > > > How ever the output is generated in /home/user1/work/.Looking at the log > > > files in active_jobs config file looks like this > > > > > > config:stdout_path=/home/user1/work//1.o > > > config:stderr_path=/home/user1/work//1.err > > > > > > I appears that the $ somehow is replacing the last subdirectory because > > > of some substitution or some sort of aliases. > > > > It's not replaced, but removed - or? I mean the "output" is missing here. > > > > > > > I do not have any sge_aliases other than the default ones. Any > > > suggestions. > > > > They are only honored in case you use the option -cwd and targets the start > > directory for the job, not the given paths to the -o/-e options. > > > > I never used OGS and I can't reproduce it with other variants. I assume the > > output of `qstat -j <job_id>` shows the same false entry? > > > > -- Reuti > > > > _______________________________________________ users mailing list [email protected] https://gridengine.org/mailman/listinfo/users
