Hi Henk,
The sge script should not require any extra parameter. The qdel command
should send the kill signal to mpirun and also remove the SGE allocated
tmp directory (in something like /tmp/174.1.all.q/) which contains the
OMPI session dir for the running job, and in turns would cause orted and
the user processes to exit.
Maybe you could try qdel -f <jid> to force delete from the sge_qmaster,
in case when sge_execd does not respond to the delete request by the
sge_qmaster?
SLIM H.A. wrote:
I am using OpenMPI 1.2.3 with SGE 6.0u7 over InfiniBand (OFED 1.2),
following the recommendation in the OpenMPI FAQ
http://www.open-mpi.org/faq/?category=running#run-n1ge-or-sge
The job runs but when the user wants to delete the job with the qdel
command, this fails. Does the mpirun command
mpirun -np $NSLOTS ./exe
in the sge script require extra parameters?
Thanks for any advice
Henk
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- Pak Lui
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