MPI_HOME is set to be /home/andreea/MPIrelated/OpenMPI/openmpi_1.3.3
But as far as I see it needs files that are only in SOURCES... so
maybe I did something wrong in the installation of OpenMPI?
If I run an already compiled file it works fine, of course. But it
does not compile
--- On *Mon, 11/2/09, Sergio Díaz /<sd...@cesga.es>/* wrote:
From: Sergio Díaz <sd...@cesga.es>
Subject: Re: [OMPI users] Checkpoint/Restart in OpenMPI
To: "Open MPI Users" <us...@open-mpi.org>
Date: Monday, November 2, 2009, 2:36 PM
Maybe the variable MPI_HOME??
Andreea m. (Costea) escribió:
> Ok...
> Maybe someone can clear me :)
>
> I have BLCR sources in this directory :
> /home/andreea/MPIrelated/BLCR/blcr-0.8.2
> it's installation is in this directory:
> /home/andreea/MPIrelated/BLCR/blcr-0.8.2/builddir
>
> OpenMPI:
> sources: /home/andreea/MPIrelated/OpenMPI/SOURCES
> installation: /home/andreea/MPIrelated/OpenMPI/openmpi_1.3.3
>
> I added to the variables (PATH, LD_LIBRARY_PATH) teh paths from the
> installation directories:
> for PATH I added:
/home/andreea/MPIrelated/BLCR/blcr-0.8.2/builddir/bin
>
> /home/andreea/MPIrelated/OpenMPI/openmpi_1.3.3/bin
> fro LD_LIBRARY_PATH:
/home/andreea/MPIrelated/BLCR/blcr-0.8.2/builddir/lib
>
> /home/andreea/MPIrelated/OpenMPI/openmpi_1.3.3/lib
>
> If I want to compile a c program, MPI based, I get errors of not
> finding the mpi.h (which is located in the OpenMPI/SOURCES/include
> directory). It can't also find the constants like:
> MPI_COMM_WORLD,MPI_INT, etc.
>
> Help, anyone?
> Thanks,
> Andreea
>
>
> --- On *Mon, 11/2/09, Sergio Díaz /<sd...@cesga.es
</mc/compose?to=sd...@cesga.es>>/* wrote:
>
>
> From: Sergio Díaz <sd...@cesga.es
</mc/compose?to=sd...@cesga.es>>
> Subject: Re: [OMPI users] Checkpoint/Restart in OpenMPI for
Sergio
> To: "Open MPI Users" <us...@open-mpi.org
</mc/compose?to=us...@open-mpi.org>>
> Date: Monday, November 2, 2009, 1:12 PM
>
> Hi,
>
> The option --enable-ft-thread doesn't exist. By default is
enable.
> The options --with-blcr and --with-blcr-libdir have to point to
> your BLCR installation dir.
> Before compiling openmpi, you have to load the blcr modules.
>
> When I installed BLCR, my installation dir was in a different
> directory.
>
> Regards,
> Sergio
>
>
>
> Andreea m. (Costea) escribió:
>> One more thing:
>> when you installed BLCR did you install it in the same
directory
>> with the sources or in a different one? And when you point
to the
>> blcr directory and the blcr library directory in openmpi
>> configure command, do you point to the installation or to the
>> sources directory?
>>
>> Regards,
>> Andreea
>>
>> --- On *Mon, 11/2/09, Andreea m. (Costea)
>> /<doodlie_s...@yahoo.com
</mc/compose?to=doodlie_s...@yahoo.com>>/* wrote:
>>
>>
>> From: Andreea m. (Costea) <doodlie_s...@yahoo.com
</mc/compose?to=doodlie_s...@yahoo.com>>
>> Subject: Re: [OMPI users] Checkpoint/Restart in OpenMPI
>> To: "Open MPI Users" <us...@open-mpi.org
</mc/compose?to=us...@open-mpi.org>>
>> Date: Monday, November 2, 2009, 7:02 AM
>>
>> Hi again.
>>
>> I have installed BLCR, passed all the tests, and now I
tried
>> to install OpenMPI. This is the configuration call:
>>
--------------------------------------------------------------------------------------------------
>> ./configure
>> --prefix=/home/andreea/MPIrelated/OpenMPI/openmpi_1.3.3/
>> --enable-ft-thread --with-ft=cr --enable-mpi-threads
>>
--with-blcr=/home/andreea/MPIrelated/BLCR/blcr-0.8.2/builddir/
>>
--with-blcr-libdir=/home/andreea/MPIrelated/BLCR/blcr-0.8.2/builddir/lib
>>
--------------------------------------------------------------------------------------------------
>>
>> In the output I got, among others, this warnings:
>>
>> configure: WARNING: no usable BFD found; using
nm-output file
>> for addr./symbol mapping
>> configure: WARNING: Unrecognized options:
--enable-ft-thread,
>> --with-ft, --enable-mpi-threads, --with-blcr,
>> --with-blcr-libdir, --enable-ltdl-convenience
>> configure: WARNING: Unrecognized options:
--enable-ft-thread,
>> --with-ft, --enable-mpi-threads, --with-blcr,
>> --with-blcr-libdir, --enable-ltdl-convenience
>>
>> Any ideas?
>> Thanks,
>> Andreea
>> --- On *Fri, 10/30/09, Sergio Díaz /<sd...@cesga.es
</mc/compose?to=sd...@cesga.es>>/* wrote:
>>
>>
>> From: Sergio Díaz <sd...@cesga.es
</mc/compose?to=sd...@cesga.es>>
>> Subject: Re: [OMPI users] Checkpoint/Restart in OpenMPI
>> To: "Open MPI Users" <us...@open-mpi.org
</mc/compose?to=us...@open-mpi.org>>
>> Date: Friday, October 30, 2009, 11:28 AM
>>
>> Hi Andreea,
>>
>> I compiled an installation of openmpi with
>> checkpoint/restart support and it is working fine
and I'm
>> trying to integrate it with SGE.
>> Did you set the right option compiling openMPI?
>> Did you installed BLCR before?
>>
>> I used these options:
>>
>> ./configure --prefix=/opt/cesga/openmpi-1.3.3
>> --with-ft=cr --enable-mpi-threads
>> --with-blcr=/opt/cesga/blcr-0.8.2
>> --with-blcr-libdir=/opt/cesga/blcr-0.8.2/lib -with-sge
>> CC=icc CXX=icpc F77=ifort FC=ifort
>>
>> Regards,
>> Sergio
>>
>> Andreea m. (Costea) escribió:
>>> Hi,
>>>
>>> I'm a newbie, and I want to test the
checkpoint/restart
>>> mechanism included in OpenMPI v 1.3.3. I have tried to
>>> search for some documentation about how to install the
>>> OpenMPI implementation in order to support
>>> checkpoint/restart, and I found lots of links to
>>>
>>> https://svn.open-mpi.org/trac/ompi/wiki/ProcessFT_CR
>>>
>>> which seems not to work. Can you please advise me what
>>> to read or what steps to follow in order to have
>>> everything working?
>>>
>>> I already installed OpenMPI but checkpoint/restart
>>> doesn't work. During installation, in installation
log I
>>> found teh following lines (don't know if it's my
>>> software configuration fault or the way I installed
>>> OpenMPI):
>>>
--------------------------------------------------------------------------------
>>> --- MCA component pml:crcpw (m4 configuration macro)
>>> checking for MCA component pml:crcpw compile
mode... dso
>>> checking if MCA component pml:crcpw can compile... no
>>>
>>> +++ Configuring MCA framework crcp
>>> checking for no configure components in framework
crcp...
>>> checking for m4 configure components in framework
>>> crcp... bkmrk
>>>
>>> --- MCA component crcp:bkmrk (m4 configuration macro)
>>> checking for MCA component crcp:bkmrk compile
mode... dso
>>> checking if MCA component crcp:bkmrk can compile... no
>>>
--------------------------------------------------------------------------------
>>>
>>> Thanks,
>>> Andreea
>>>
>>>
>>>
>>>
------------------------------------------------------------------------
>>>
>>> _______________________________________________
>>> users mailing list
>>> us...@open-mpi.org </mc/compose?to=us...@open-mpi.org>
>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>
>>
>> --
>> Sergio Díaz Montes
>> Centro de Supercomputacion de Galicia
>> Avda. de Vigo. s/n (Campus Sur) 15706 Santiago de
>> Compostela (Spain)
>> Tel: +34 981 56 98 10 ; Fax: +34 981 59 46 16
>> email: sd...@cesga.es
</mc/compose?to=sd...@cesga.es> ; http://www.cesga.es/
>>
>> ------------------------------------------------
>>
>>
------------------------------------------------------------------------
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