After a reboot and a new setting of the variables I could compile. Is there a
way to set the variables for all the sessions?
The only one that is set after reboot is PATH, because I modified the file
/etc/profile
I added new files to
/etc/ld.so.conf.d
, that contains the right lib paths, but it seems that LD_LIBRARY_PATH is
always empty. I have to manually set it.
MPI_HOME is also empty, after reboot.
Thanks a lot,
Andreea
--- On Mon, 11/2/09, Sergio Díaz <sd...@cesga.es> wrote:
From: Sergio Díaz <sd...@cesga.es>
Subject: Re: [OMPI users] Checkpoint/Restart in OpenMPI
To: "Open MPI Users" <us...@open-mpi.org>
List-Post: users@lists.open-mpi.org
Date: Monday, November 2, 2009, 2:56 PM
The mpi.h file is also in the installation dir. It is in the include directory
of your installation.
I think that it is a path problem...
Andreea m. (Costea) escribió:
> MPI_HOME is set to be /home/andreea/MPIrelated/OpenMPI/openmpi_1.3.3
> But as far as I see it needs files that are only in SOURCES... so maybe I did
> something wrong in the installation of OpenMPI?
> If I run an already compiled file it works fine, of course. But it does not
> compile
>
> --- On *Mon, 11/2/09, Sergio Díaz /<sd...@cesga.es>/* wrote:
>
>
> From: Sergio Díaz <sd...@cesga.es>
> Subject: Re: [OMPI users] Checkpoint/Restart in OpenMPI
> To: "Open MPI Users" <us...@open-mpi.org>
> Date: Monday, November 2, 2009, 2:36 PM
>
> Maybe the variable MPI_HOME??
>
>
>
> Andreea m. (Costea) escribió:
> > Ok...
> > Maybe someone can clear me :)
> >
> > I have BLCR sources in this directory :
> > /home/andreea/MPIrelated/BLCR/blcr-0.8.2
> > it's installation is in this directory:
> > /home/andreea/MPIrelated/BLCR/blcr-0.8.2/builddir
> >
> > OpenMPI:
> > sources: /home/andreea/MPIrelated/OpenMPI/SOURCES
> > installation: /home/andreea/MPIrelated/OpenMPI/openmpi_1.3.3
> >
> > I added to the variables (PATH, LD_LIBRARY_PATH) teh paths from the
> > installation directories:
> > for PATH I added:
> /home/andreea/MPIrelated/BLCR/blcr-0.8.2/builddir/bin
> > >
>/home/andreea/MPIrelated/OpenMPI/openmpi_1.3.3/bin
> > fro LD_LIBRARY_PATH:
> /home/andreea/MPIrelated/BLCR/blcr-0.8.2/builddir/lib
> > >
>/home/andreea/MPIrelated/OpenMPI/openmpi_1.3.3/lib
> >
> > If I want to compile a c program, MPI based, I get errors of not
> > finding the mpi.h (which is located in the OpenMPI/SOURCES/include
> > directory). It can't also find the constants like:
> > MPI_COMM_WORLD,MPI_INT, etc.
> >
> > Help, anyone?
> > Thanks,
> > Andreea
> >
> >
> > --- On *Mon, 11/2/09, Sergio Díaz /<sd...@cesga.es
> </mc/compose?to=sd...@cesga.es>>/* wrote:
> >
> >
> > From: Sergio Díaz <sd...@cesga.es
> </mc/compose?to=sd...@cesga.es>>
> > Subject: Re: [OMPI users] Checkpoint/Restart in OpenMPI for
> Sergio
> > To: "Open MPI Users" <us...@open-mpi.org
> </mc/compose?to=us...@open-mpi.org>>
> > Date: Monday, November 2, 2009, 1:12 PM
> >
> > Hi,
> >
> > The option --enable-ft-thread doesn't exist. By default is
> enable.
> > The options --with-blcr and --with-blcr-libdir have to point to
> > your BLCR installation dir.
> > Before compiling openmpi, you have to load the blcr modules.
> >
> > When I installed BLCR, my installation dir was in a different
> > directory.
> >
> > Regards,
> > Sergio
> >
> >
> >
> > Andreea m. (Costea) escribió:
> >> One more thing:
> >> when you installed BLCR did you install it in the same
> directory
> >> with the sources or in a different one? And when you point
> to the
> >> blcr directory and the blcr library directory in openmpi
> >> configure command, do you point to the installation or to the
> >> sources directory?
> >>
> >> Regards,
> >> Andreea
> >>
> >> --- On *Mon, 11/2/09, Andreea m. (Costea)
> >> /<doodlie_s...@yahoo.com
> </mc/compose?to=doodlie_s...@yahoo.com>>/* wrote:
> >>
> >>
> >> From: Andreea m. (Costea) <doodlie_s...@yahoo.com
> </mc/compose?to=doodlie_s...@yahoo.com>>
> >> Subject: Re: [OMPI users] Checkpoint/Restart in OpenMPI
> >> To: "Open MPI Users" <us...@open-mpi.org
> </mc/compose?to=us...@open-mpi.org>>
> >> Date: Monday, November 2, 2009, 7:02 AM
> >>
> >> Hi again.
> >>
> >> I have installed BLCR, passed all the tests, and now I
> tried
> >> to install OpenMPI. This is the configuration call:
> >>
>--------------------------------------------------------------------------------------------------
> >> ./configure
> >> --prefix=/home/andreea/MPIrelated/OpenMPI/openmpi_1.3.3/
> >> --enable-ft-thread --with-ft=cr --enable-mpi-threads
> >>
>--with-blcr=/home/andreea/MPIrelated/BLCR/blcr-0.8.2/builddir/
> >>
>--with-blcr-libdir=/home/andreea/MPIrelated/BLCR/blcr-0.8.2/builddir/lib
> >>
>--------------------------------------------------------------------------------------------------
> >>
> >> In the output I got, among others, this warnings:
> >>
> >> configure: WARNING: no usable BFD found; using
> nm-output file
> >> for addr./symbol mapping
> >> configure: WARNING: Unrecognized options:
> --enable-ft-thread,
> >> --with-ft, --enable-mpi-threads, --with-blcr,
> >> --with-blcr-libdir, --enable-ltdl-convenience
> >> configure: WARNING: Unrecognized options:
> --enable-ft-thread,
> >> --with-ft, --enable-mpi-threads, --with-blcr,
> >> --with-blcr-libdir, --enable-ltdl-convenience
> >>
> >> Any ideas?
> >> Thanks,
> >> Andreea
> >> --- On *Fri, 10/30/09, Sergio Díaz /<sd...@cesga.es
> </mc/compose?to=sd...@cesga.es>>/* wrote:
> >>
> >>
> >> From: Sergio Díaz <sd...@cesga.es
> </mc/compose?to=sd...@cesga.es>>
> >> Subject: Re: [OMPI users] Checkpoint/Restart in OpenMPI
> >> To: "Open MPI Users" <us...@open-mpi.org
> </mc/compose?to=us...@open-mpi.org>>
> >> Date: Friday, October 30, 2009, 11:28 AM
> >>
> >> Hi Andreea,
> >>
> >> I compiled an installation of openmpi with
> >> checkpoint/restart support and it is working fine
> and I'm
> >> trying to integrate it with SGE.
> >> Did you set the right option compiling openMPI?
> >> Did you installed BLCR before?
> >>
> >> I used these options:
> >>
> >> ./configure --prefix=/opt/cesga/openmpi-1.3.3
> >> --with-ft=cr --enable-mpi-threads
> >> --with-blcr=/opt/cesga/blcr-0.8.2
> >> --with-blcr-libdir=/opt/cesga/blcr-0.8.2/lib -with-sge
> >> CC=icc CXX=icpc F77=ifort FC=ifort
> >>
> >> Regards,
> >> Sergio
> >>
> >> Andreea m. (Costea) escribió:
> >>> Hi,
> >>>
> >>> I'm a newbie, and I want to test the
> checkpoint/restart
> >>> mechanism included in OpenMPI v 1.3.3. I have tried to
> >>> search for some documentation about how to install the
> >>> OpenMPI implementation in order to support
> >>> checkpoint/restart, and I found lots of links to
> >>>
> >>> https://svn.open-mpi.org/trac/ompi/wiki/ProcessFT_CR
> >>>
> >>> which seems not to work. Can you please advise me what
> >>> to read or what steps to follow in order to have
> >>> everything working?
> >>>
> >>> I already installed OpenMPI but checkpoint/restart
> >>> doesn't work. During installation, in installation
> log I
> >>> found teh following lines (don't know if it's my
> >>> software configuration fault or the way I installed
> >>> OpenMPI):
> >>>
>--------------------------------------------------------------------------------
> >>> --- MCA component pml:crcpw (m4 configuration macro)
> >>> checking for MCA component pml:crcpw compile
> mode... dso
> >>> checking if MCA component pml:crcpw can compile... no
> >>>
> >>> +++ Configuring MCA framework crcp
> >>> checking for no configure components in framework
> crcp...
> >>> checking for m4 configure components in framework
> >>> crcp... bkmrk
> >>>
> >>> --- MCA component crcp:bkmrk (m4 configuration macro)
> >>> checking for MCA component crcp:bkmrk compile
> mode... dso
> >>> checking if MCA component crcp:bkmrk can compile... no
> >>>
>--------------------------------------------------------------------------------
> >>>
> >>> Thanks,
> >>> Andreea
> >>>
> >>>
> >>>
> >>>
>------------------------------------------------------------------------
> >>>
> >>> _______________________________________________
> >>> users mailing list
> >>> us...@open-mpi.org </mc/compose?to=us...@open-mpi.org>
> >>> http://www.open-mpi.org/mailman/listinfo.cgi/users
> >>
> >>
> >> --
> >> Sergio Díaz Montes
> >> Centro de Supercomputacion de Galicia
> >> Avda. de Vigo. s/n (Campus Sur) 15706 Santiago de
> >> Compostela (Spain)
> >> Tel: +34 981 56 98 10 ; Fax: +34 981 59 46 16
> >> email: sd...@cesga.es
> </mc/compose?to=sd...@cesga.es> ; http://www.cesga.es/
> >>
> >> ------------------------------------------------
> >>
> >>
>
> ------------------------------------------------------------------------
>
> _______________________________________________
> users mailing list
> us...@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users
-- Sergio Díaz Montes
Centro de Supercomputacion de Galicia
Avda. de Vigo. s/n (Campus Sur) 15706 Santiago de Compostela (Spain)
Tel: +34 981 56 98 10 ; Fax: +34 981 59 46 16
email: sd...@cesga.es ; http://www.cesga.es/
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