Hi, I am trying to locally compile software which uses openmpi (1.6.3), but I got this error:
restraint_camshift2.o:(.toc+0x98): undefined reference to `ompi_mpi_cxx_op_intercept' restraint_camshift2.o: In function `Intracomm': /home/users/didymos/openmpi-1.6.3/include/openmpi/ompi/mpi/cxx/intracomm.h:25: undefined reference to `MPI::Comm::Comm()' /home/users/didymos/openmpi-1.6.3/include/openmpi/ompi/mpi/cxx/intracomm.h:25: undefined reference to `MPI::Comm::Comm()' restraint_camshift2.o: In function `Intracomm': /home/users/didymos/openmpi-1.6.3/include/openmpi/ompi/mpi/cxx/intracomm_inln.h:23: undefined reference to `MPI::Comm::Comm()' restraint_camshift2.o: In function `Intracomm': /home/users/didymos/openmpi-1.6.3/include/openmpi/ompi/mpi/cxx/intracomm.h:25: undefined reference to `MPI::Comm::Comm()' /home/users/didymos/openmpi-1.6.3/include/openmpi/ompi/mpi/cxx/intracomm.h:25: undefined reference to `MPI::Comm::Comm()' restraint_camshift2.o:/home/users/didymos/openmpi-1.6.3/include/openmpi/ompi/mpi/cxx/intracomm.h:25: more undefined references to `MPI::Comm::Comm()' follow restraint_camshift2.o:(.data.rel.ro._ZTVN3MPI3WinE[_ZTVN3MPI3WinE]+0x48): undefined reference to `MPI::Win::Free()' restraint_camshift2.o:(.data.rel.ro._ZTVN3MPI8DatatypeE[_ZTVN3MPI8DatatypeE]+0x78): undefined reference to `MPI::Datatype::Free()' collect2: error: ld returned 1 exit status make[3]: *** [mdrun] Error 1 make[3]: Leaving directory `/home/users/didymos/src/gromacs-4.5.5/src/kernel' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/home/users/didymos/src/gromacs-4.5.5/src' make[1]: *** [all] Error 2 make[1]: Leaving directory `/home/users/didymos/src/gromacs-4.5.5/src' make: *** [all-recursive] Error 1 I am using gcc 4.7.3 Any ideas or suggestions? Thanks! Best, tomek
