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On Jul 9, 2013, at 8:36 AM, Tomek Wlodarski <tomek.wlodar...@gmail.com> wrote:
> Hi,
>
> I am trying to locally compile software which uses openmpi (1.6.3),
> but I got this error:
>
> restraint_camshift2.o:(.toc+0x98): undefined reference to
> `ompi_mpi_cxx_op_intercept'
> restraint_camshift2.o: In function `Intracomm':
> /home/users/didymos/openmpi-1.6.3/include/openmpi/ompi/mpi/cxx/intracomm.h:25:
> undefined reference to `MPI::Comm::Comm()'
> /home/users/didymos/openmpi-1.6.3/include/openmpi/ompi/mpi/cxx/intracomm.h:25:
> undefined reference to `MPI::Comm::Comm()'
> restraint_camshift2.o: In function `Intracomm':
> /home/users/didymos/openmpi-1.6.3/include/openmpi/ompi/mpi/cxx/intracomm_inln.h:23:
> undefined reference to `MPI::Comm::Comm()'
> restraint_camshift2.o: In function `Intracomm':
> /home/users/didymos/openmpi-1.6.3/include/openmpi/ompi/mpi/cxx/intracomm.h:25:
> undefined reference to `MPI::Comm::Comm()'
> /home/users/didymos/openmpi-1.6.3/include/openmpi/ompi/mpi/cxx/intracomm.h:25:
> undefined reference to `MPI::Comm::Comm()'
> restraint_camshift2.o:/home/users/didymos/openmpi-1.6.3/include/openmpi/ompi/mpi/cxx/intracomm.h:25:
> more undefined references to `MPI::Comm::Comm()' follow
> restraint_camshift2.o:(.data.rel.ro._ZTVN3MPI3WinE[_ZTVN3MPI3WinE]+0x48):
> undefined reference to `MPI::Win::Free()'
> restraint_camshift2.o:(.data.rel.ro._ZTVN3MPI8DatatypeE[_ZTVN3MPI8DatatypeE]+0x78):
> undefined reference to `MPI::Datatype::Free()'
> collect2: error: ld returned 1 exit status
> make[3]: *** [mdrun] Error 1
> make[3]: Leaving directory `/home/users/didymos/src/gromacs-4.5.5/src/kernel'
> make[2]: *** [all-recursive] Error 1
> make[2]: Leaving directory `/home/users/didymos/src/gromacs-4.5.5/src'
> make[1]: *** [all] Error 2
> make[1]: Leaving directory `/home/users/didymos/src/gromacs-4.5.5/src'
> make: *** [all-recursive] Error 1
>
> I am using gcc 4.7.3
> Any ideas or suggestions?
> Thanks!
> Best,
>
> tomek
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