Hmm...try adding "-mca rmaps_base_verbose 10 -mca ess_base_verbose 5" to your cmd line and let's see what it thinks it found.
On Dec 18, 2013, at 6:55 PM, tmish...@jcity.maeda.co.jp wrote: > > > Hi, I report one more problem with openmpi-1.7.4rc1, > which is more serious. > > For our 32 core nodes(AMD magny cours based) which has > 8 numa-nodes, "-bind-to numa" does not work. Without > this option, it works. For your infomation, at the > bottom of this mail, I added the lstopo information > of the node. > > Regards, > Tetsuya Mishima > > [mishima@manage ~]$ qsub -I -l nodes=1:ppn=32 > qsub: waiting for job 8352.manage.cluster to start > qsub: job 8352.manage.cluster ready > > [mishima@node03 demos]$ mpirun -np 8 -report-bindings -bind-to numa myprog > [node03.cluster:15316] [[37582,0],0] bind:upward target NUMANode type > Machine > -------------------------------------------------------------------------- > A request was made to bind to NUMA, but an appropriate target could not > be found on node node03. > -------------------------------------------------------------------------- > [mishima@node03 ~]$ cd ~/Desktop/openmpi-1.7/demos/ > [mishima@node03 demos]$ mpirun -np 8 -report-bindings myprog > [node03.cluster:15282] MCW rank 2 bound to socket 1[core 8[hwt 0]]: > [./././././././.][B/././././././.][./././././././.][ > ./././././././.] > [node03.cluster:15282] MCW rank 3 bound to socket 1[core 9[hwt 0]]: > [./././././././.][./B/./././././.][./././././././.][ > ./././././././.] > [node03.cluster:15282] MCW rank 4 bound to socket 2[core 16[hwt 0]]: > [./././././././.][./././././././.][B/././././././.] > [./././././././.] > [node03.cluster:15282] MCW rank 5 bound to socket 2[core 17[hwt 0]]: > [./././././././.][./././././././.][./B/./././././.] > [./././././././.] > [node03.cluster:15282] MCW rank 6 bound to socket 3[core 24[hwt 0]]: > [./././././././.][./././././././.][./././././././.] > [B/././././././.] > [node03.cluster:15282] MCW rank 7 bound to socket 3[core 25[hwt 0]]: > [./././././././.][./././././././.][./././././././.] > [./B/./././././.] > [node03.cluster:15282] MCW rank 0 bound to socket 0[core 0[hwt 0]]: > [B/././././././.][./././././././.][./././././././.][ > ./././././././.] > [node03.cluster:15282] MCW rank 1 bound to socket 0[core 1[hwt 0]]: > [./B/./././././.][./././././././.][./././././././.][ > ./././././././.] > Hello world from process 2 of 8 > Hello world from process 5 of 8 > Hello world from process 4 of 8 > Hello world from process 3 of 8 > Hello world from process 1 of 8 > Hello world from process 7 of 8 > Hello world from process 6 of 8 > Hello world from process 0 of 8 > [mishima@node03 demos]$ ~/opt/hwloc/bin/lstopo-no-graphics > Machine (126GB) > Socket L#0 (32GB) > NUMANode L#0 (P#0 16GB) + L3 L#0 (5118KB) > L2 L#0 (512KB) + L1d L#0 (64KB) + L1i L#0 (64KB) + Core L#0 + PU L#0 > (P#0) > L2 L#1 (512KB) + L1d L#1 (64KB) + L1i L#1 (64KB) + Core L#1 + PU L#1 > (P#1) > L2 L#2 (512KB) + L1d L#2 (64KB) + L1i L#2 (64KB) + Core L#2 + PU L#2 > (P#2) > L2 L#3 (512KB) + L1d L#3 (64KB) + L1i L#3 (64KB) + Core L#3 + PU L#3 > (P#3) > NUMANode L#1 (P#1 16GB) + L3 L#1 (5118KB) > L2 L#4 (512KB) + L1d L#4 (64KB) + L1i L#4 (64KB) + Core L#4 + PU L#4 > (P#4) > L2 L#5 (512KB) + L1d L#5 (64KB) + L1i L#5 (64KB) + Core L#5 + PU L#5 > (P#5) > L2 L#6 (512KB) + L1d L#6 (64KB) + L1i L#6 (64KB) + Core L#6 + PU L#6 > (P#6) > L2 L#7 (512KB) + L1d L#7 (64KB) + L1i L#7 (64KB) + Core L#7 + PU L#7 > (P#7) > Socket L#1 (32GB) > NUMANode L#2 (P#6 16GB) + L3 L#2 (5118KB) > L2 L#8 (512KB) + L1d L#8 (64KB) + L1i L#8 (64KB) + Core L#8 + PU L#8 > (P#8) > L2 L#9 (512KB) + L1d L#9 (64KB) + L1i L#9 (64KB) + Core L#9 + PU L#9 > (P#9) > L2 L#10 (512KB) + L1d L#10 (64KB) + L1i L#10 (64KB) + Core L#10 + PU > L#10 (P#10) > L2 L#11 (512KB) + L1d L#11 (64KB) + L1i L#11 (64KB) + Core L#11 + PU > L#11 (P#11) > NUMANode L#3 (P#7 16GB) + L3 L#3 (5118KB) > L2 L#12 (512KB) + L1d L#12 (64KB) + L1i L#12 (64KB) + Core L#12 + PU > L#12 (P#12) > L2 L#13 (512KB) + L1d L#13 (64KB) + L1i L#13 (64KB) + Core L#13 + PU > L#13 (P#13) > L2 L#14 (512KB) + L1d L#14 (64KB) + L1i L#14 (64KB) + Core L#14 + PU > L#14 (P#14) > L2 L#15 (512KB) + L1d L#15 (64KB) + L1i L#15 (64KB) + Core L#15 + PU > L#15 (P#15) > Socket L#2 (32GB) > NUMANode L#4 (P#4 16GB) + L3 L#4 (5118KB) > L2 L#16 (512KB) + L1d L#16 (64KB) + L1i L#16 (64KB) + Core L#16 + PU > L#16 (P#16) > L2 L#17 (512KB) + L1d L#17 (64KB) + L1i L#17 (64KB) + Core L#17 + PU > L#17 (P#17) > L2 L#18 (512KB) + L1d L#18 (64KB) + L1i L#18 (64KB) + Core L#18 + PU > L#18 (P#18) > L2 L#19 (512KB) + L1d L#19 (64KB) + L1i L#19 (64KB) + Core L#19 + PU > L#19 (P#19) > NUMANode L#5 (P#5 16GB) + L3 L#5 (5118KB) > L2 L#20 (512KB) + L1d L#20 (64KB) + L1i L#20 (64KB) + Core L#20 + PU > L#20 (P#20) > L2 L#21 (512KB) + L1d L#21 (64KB) + L1i L#21 (64KB) + Core L#21 + PU > L#21 (P#21) > L2 L#22 (512KB) + L1d L#22 (64KB) + L1i L#22 (64KB) + Core L#22 + PU > L#22 (P#22) > L2 L#23 (512KB) + L1d L#23 (64KB) + L1i L#23 (64KB) + Core L#23 + PU > L#23 (P#23) > Socket L#3 (32GB) > NUMANode L#6 (P#2 16GB) + L3 L#6 (5118KB) > L2 L#24 (512KB) + L1d L#24 (64KB) + L1i L#24 (64KB) + Core L#24 + PU > L#24 (P#24) > L2 L#25 (512KB) + L1d L#25 (64KB) + L1i L#25 (64KB) + Core L#25 + PU > L#25 (P#25) > L2 L#26 (512KB) + L1d L#26 (64KB) + L1i L#26 (64KB) + Core L#26 + PU > L#26 (P#26) > L2 L#27 (512KB) + L1d L#27 (64KB) + L1i L#27 (64KB) + Core L#27 + PU > L#27 (P#27) > NUMANode L#7 (P#3 16GB) + L3 L#7 (5118KB) > L2 L#28 (512KB) + L1d L#28 (64KB) + L1i L#28 (64KB) + Core L#28 + PU > L#28 (P#28) > L2 L#29 (512KB) + L1d L#29 (64KB) + L1i L#29 (64KB) + Core L#29 + PU > L#29 (P#29) > L2 L#30 (512KB) + L1d L#30 (64KB) + L1i L#30 (64KB) + Core L#30 + PU > L#30 (P#30) > L2 L#31 (512KB) + L1d L#31 (64KB) + L1i L#31 (64KB) + Core L#31 + PU > L#31 (P#31) > HostBridge L#0 > PCIBridge > PCI 14e4:1639 > Net L#0 "eth0" > PCI 14e4:1639 > Net L#1 "eth1" > PCIBridge > PCI 14e4:1639 > Net L#2 "eth2" > PCI 14e4:1639 > Net L#3 "eth3" > PCIBridge > PCIBridge > PCIBridge > PCI 1000:0072 > Block L#4 "sdb" > Block L#5 "sda" > PCI 1002:4390 > Block L#6 "sr0" > PCIBridge > PCI 102b:0532 > HostBridge L#7 > PCIBridge > PCI 15b3:6274 > Net L#7 "ib0" > OpenFabrics L#8 "mthca0" > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
