Hi Ralph,
I found the reason. I attached the main part of output with 32 core node(node03) and 8 core node(node05) at the bottom. >From this information, socket of node03 includes numa-node. On the other hand, numa-node of node05 includes socket. The direction of object tree is opposite. Since "-map-by socket" may be assumed as default, for node05, "-bind-to numa and -map-by socket" means upward search. For node03, this should be downward. I guess that openmpi-1.7.4rc1 will always assume numa-node includes socket. Is it right? Then, upward search is assumed in orte_rmaps_base_compute_bindings even for node03 when I put "-bind-to numa and -map-by socket" option. [node03.cluster:15508] [[38286,0],0] rmaps:base:compute_usage [node03.cluster:15508] mca:rmaps: compute bindings for job [38286,1] with policy NUMA [node03.cluster:15508] mca:rmaps: bind upwards for job [38286,1] with bindings NUMA [node03.cluster:15508] [[38286,0],0] bind:upward target NUMANode type Machine That's the reason of this trouble. Therefore, adding "-map-by core" works. (mapping pattern seems to be strange ...) [mishima@node03 demos]$ mpirun -np 8 -bind-to numa -map-by core -report-bindings myprog [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type NUMANode [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type NUMANode [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type NUMANode [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type NUMANode [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type NUMANode [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type NUMANode [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type NUMANode [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type Cache [node03.cluster:15885] [[38679,0],0] bind:upward target NUMANode type NUMANode [node03.cluster:15885] MCW rank 2 bound to socket 0[core 0[hwt 0]], socket 0[core 1[hwt 0]], socket 0[core 2[hwt 0]], so cket 0[core 3[hwt 0]]: [B/B/B/B/./././.][./././././././.][./././././././.][./././././././.] [node03.cluster:15885] MCW rank 3 bound to socket 0[core 0[hwt 0]], socket 0[core 1[hwt 0]], socket 0[core 2[hwt 0]], so cket 0[core 3[hwt 0]]: [B/B/B/B/./././.][./././././././.][./././././././.][./././././././.] [node03.cluster:15885] MCW rank 4 bound to socket 0[core 4[hwt 0]], socket 0[core 5[hwt 0]], socket 0[core 6[hwt 0]], so cket 0[core 7[hwt 0]]: [././././B/B/B/B][./././././././.][./././././././.][./././././././.] [node03.cluster:15885] MCW rank 5 bound to socket 0[core 4[hwt 0]], socket 0[core 5[hwt 0]], socket 0[core 6[hwt 0]], so cket 0[core 7[hwt 0]]: [././././B/B/B/B][./././././././.][./././././././.][./././././././.] [node03.cluster:15885] MCW rank 6 bound to socket 0[core 4[hwt 0]], socket 0[core 5[hwt 0]], socket 0[core 6[hwt 0]], so cket 0[core 7[hwt 0]]: [././././B/B/B/B][./././././././.][./././././././.][./././././././.] [node03.cluster:15885] MCW rank 7 bound to socket 0[core 4[hwt 0]], socket 0[core 5[hwt 0]], socket 0[core 6[hwt 0]], so cket 0[core 7[hwt 0]]: [././././B/B/B/B][./././././././.][./././././././.][./././././././.] [node03.cluster:15885] MCW rank 0 bound to socket 0[core 0[hwt 0]], socket 0[core 1[hwt 0]], socket 0[core 2[hwt 0]], so cket 0[core 3[hwt 0]]: [B/B/B/B/./././.][./././././././.][./././././././.][./././././././.] [node03.cluster:15885] MCW rank 1 bound to socket 0[core 0[hwt 0]], socket 0[core 1[hwt 0]], socket 0[core 2[hwt 0]], so cket 0[core 3[hwt 0]]: [B/B/B/B/./././.][./././././././.][./././././././.][./././././././.] Hello world from process 6 of 8 Hello world from process 5 of 8 Hello world from process 0 of 8 Hello world from process 7 of 8 Hello world from process 3 of 8 Hello world from process 4 of 8 Hello world from process 2 of 8 Hello world from process 1 of 8 Regards, Tetsuya Mishima [node03.cluster:15508] Type: Machine Number of child objects: 4 Name=NULL total=132358820KB Backend=Linux OSName=Linux OSRelease=2.6.18-308.16.1.el5 OSVersion="#1 SMP Tue Oct 2 22:01:43 EDT 2012" Architecture=x86_64 Cpuset: 0xffffffff Online: 0xffffffff Allowed: 0xffffffff Bind CPU proc: TRUE Bind CPU thread: TRUE Bind MEM proc: FALSE Bind MEM thread: TRUE Type: Socket Number of child objects: 2 Name=NULL total=33071780KB CPUModel="AMD Opteron(tm) Processor 6136" Cpuset: 0x000000ff Online: 0x000000ff Allowed: 0x000000ff Type: NUMANode Number of child objects: 1 [node05.cluster:21750] Type: Machine Number of child objects: 2 Name=NULL total=33080072KB Backend=Linux OSName=Linux OSRelease=2.6.18-308.16.1.el5 OSVersion="#1 SMP Tue Oct 2 22:01:43 EDT 2012" Architecture=x86_64 Cpuset: 0x000000ff Online: 0x000000ff Allowed: 0x000000ff Bind CPU proc: TRUE Bind CPU thread: TRUE Bind MEM proc: FALSE Bind MEM thread: TRUE Type: NUMANode Number of child objects: 1 Name=NULL local=16532232KB total=16532232KB Cpuset: 0x0000000f Online: 0x0000000f Allowed: 0x0000000f Type: Socket Number of child objects: 1 > Hmm...try adding "-mca rmaps_base_verbose 10 -mca ess_base_verbose 5" to your cmd line and let's see what it thinks it found. > > > On Dec 18, 2013, at 6:55 PM, tmish...@jcity.maeda.co.jp wrote: > > > > > > > Hi, I report one more problem with openmpi-1.7.4rc1, > > which is more serious. > > > > For our 32 core nodes(AMD magny cours based) which has > > 8 numa-nodes, "-bind-to numa" does not work. Without > > this option, it works. For your infomation, at the > > bottom of this mail, I added the lstopo information > > of the node. > > > > Regards, > > Tetsuya Mishima > > > > [mishima@manage ~]$ qsub -I -l nodes=1:ppn=32 > > qsub: waiting for job 8352.manage.cluster to start > > qsub: job 8352.manage.cluster ready > > > > [mishima@node03 demos]$ mpirun -np 8 -report-bindings -bind-to numa myprog > > [node03.cluster:15316] [[37582,0],0] bind:upward target NUMANode type > > Machine > > -------------------------------------------------------------------------- > > A request was made to bind to NUMA, but an appropriate target could not > > be found on node node03. > > -------------------------------------------------------------------------- > > [mishima@node03 ~]$ cd ~/Desktop/openmpi-1.7/demos/ > > [mishima@node03 demos]$ mpirun -np 8 -report-bindings myprog > > [node03.cluster:15282] MCW rank 2 bound to socket 1[core 8[hwt 0]]: > > [./././././././.][B/././././././.][./././././././.][ > > ./././././././.] > > [node03.cluster:15282] MCW rank 3 bound to socket 1[core 9[hwt 0]]: > > [./././././././.][./B/./././././.][./././././././.][ > > ./././././././.] > > [node03.cluster:15282] MCW rank 4 bound to socket 2[core 16[hwt 0]]: > > [./././././././.][./././././././.][B/././././././.] > > [./././././././.] > > [node03.cluster:15282] MCW rank 5 bound to socket 2[core 17[hwt 0]]: > > [./././././././.][./././././././.][./B/./././././.] > > [./././././././.] > > [node03.cluster:15282] MCW rank 6 bound to socket 3[core 24[hwt 0]]: > > [./././././././.][./././././././.][./././././././.] > > [B/././././././.] > > [node03.cluster:15282] MCW rank 7 bound to socket 3[core 25[hwt 0]]: > > [./././././././.][./././././././.][./././././././.] > > [./B/./././././.] > > [node03.cluster:15282] MCW rank 0 bound to socket 0[core 0[hwt 0]]: > > [B/././././././.][./././././././.][./././././././.][ > > ./././././././.] > > [node03.cluster:15282] MCW rank 1 bound to socket 0[core 1[hwt 0]]: > > [./B/./././././.][./././././././.][./././././././.][ > > ./././././././.] > > Hello world from process 2 of 8 > > Hello world from process 5 of 8 > > Hello world from process 4 of 8 > > Hello world from process 3 of 8 > > Hello world from process 1 of 8 > > Hello world from process 7 of 8 > > Hello world from process 6 of 8 > > Hello world from process 0 of 8 > > [mishima@node03 demos]$ ~/opt/hwloc/bin/lstopo-no-graphics > > Machine (126GB) > > Socket L#0 (32GB) > > NUMANode L#0 (P#0 16GB) + L3 L#0 (5118KB) > > L2 L#0 (512KB) + L1d L#0 (64KB) + L1i L#0 (64KB) + Core L#0 + PU L#0 > > (P#0) > > L2 L#1 (512KB) + L1d L#1 (64KB) + L1i L#1 (64KB) + Core L#1 + PU L#1 > > (P#1) > > L2 L#2 (512KB) + L1d L#2 (64KB) + L1i L#2 (64KB) + Core L#2 + PU L#2 > > (P#2) > > L2 L#3 (512KB) + L1d L#3 (64KB) + L1i L#3 (64KB) + Core L#3 + PU L#3 > > (P#3) > > NUMANode L#1 (P#1 16GB) + L3 L#1 (5118KB) > > L2 L#4 (512KB) + L1d L#4 (64KB) + L1i L#4 (64KB) + Core L#4 + PU L#4 > > (P#4) > > L2 L#5 (512KB) + L1d L#5 (64KB) + L1i L#5 (64KB) + Core L#5 + PU L#5 > > (P#5) > > L2 L#6 (512KB) + L1d L#6 (64KB) + L1i L#6 (64KB) + Core L#6 + PU L#6 > > (P#6) > > L2 L#7 (512KB) + L1d L#7 (64KB) + L1i L#7 (64KB) + Core L#7 + PU L#7 > > (P#7) > > Socket L#1 (32GB) > > NUMANode L#2 (P#6 16GB) + L3 L#2 (5118KB) > > L2 L#8 (512KB) + L1d L#8 (64KB) + L1i L#8 (64KB) + Core L#8 + PU L#8 > > (P#8) > > L2 L#9 (512KB) + L1d L#9 (64KB) + L1i L#9 (64KB) + Core L#9 + PU L#9 > > (P#9) > > L2 L#10 (512KB) + L1d L#10 (64KB) + L1i L#10 (64KB) + Core L#10 + PU > > L#10 (P#10) > > L2 L#11 (512KB) + L1d L#11 (64KB) + L1i L#11 (64KB) + Core L#11 + PU > > L#11 (P#11) > > NUMANode L#3 (P#7 16GB) + L3 L#3 (5118KB) > > L2 L#12 (512KB) + L1d L#12 (64KB) + L1i L#12 (64KB) + Core L#12 + PU > > L#12 (P#12) > > L2 L#13 (512KB) + L1d L#13 (64KB) + L1i L#13 (64KB) + Core L#13 + PU > > L#13 (P#13) > > L2 L#14 (512KB) + L1d L#14 (64KB) + L1i L#14 (64KB) + Core L#14 + PU > > L#14 (P#14) > > L2 L#15 (512KB) + L1d L#15 (64KB) + L1i L#15 (64KB) + Core L#15 + PU > > L#15 (P#15) > > Socket L#2 (32GB) > > NUMANode L#4 (P#4 16GB) + L3 L#4 (5118KB) > > L2 L#16 (512KB) + L1d L#16 (64KB) + L1i L#16 (64KB) + Core L#16 + PU > > L#16 (P#16) > > L2 L#17 (512KB) + L1d L#17 (64KB) + L1i L#17 (64KB) + Core L#17 + PU > > L#17 (P#17) > > L2 L#18 (512KB) + L1d L#18 (64KB) + L1i L#18 (64KB) + Core L#18 + PU > > L#18 (P#18) > > L2 L#19 (512KB) + L1d L#19 (64KB) + L1i L#19 (64KB) + Core L#19 + PU > > L#19 (P#19) > > NUMANode L#5 (P#5 16GB) + L3 L#5 (5118KB) > > L2 L#20 (512KB) + L1d L#20 (64KB) + L1i L#20 (64KB) + Core L#20 + PU > > L#20 (P#20) > > L2 L#21 (512KB) + L1d L#21 (64KB) + L1i L#21 (64KB) + Core L#21 + PU > > L#21 (P#21) > > L2 L#22 (512KB) + L1d L#22 (64KB) + L1i L#22 (64KB) + Core L#22 + PU > > L#22 (P#22) > > L2 L#23 (512KB) + L1d L#23 (64KB) + L1i L#23 (64KB) + Core L#23 + PU > > L#23 (P#23) > > Socket L#3 (32GB) > > NUMANode L#6 (P#2 16GB) + L3 L#6 (5118KB) > > L2 L#24 (512KB) + L1d L#24 (64KB) + L1i L#24 (64KB) + Core L#24 + PU > > L#24 (P#24) > > L2 L#25 (512KB) + L1d L#25 (64KB) + L1i L#25 (64KB) + Core L#25 + PU > > L#25 (P#25) > > L2 L#26 (512KB) + L1d L#26 (64KB) + L1i L#26 (64KB) + Core L#26 + PU > > L#26 (P#26) > > L2 L#27 (512KB) + L1d L#27 (64KB) + L1i L#27 (64KB) + Core L#27 + PU > > L#27 (P#27) > > NUMANode L#7 (P#3 16GB) + L3 L#7 (5118KB) > > L2 L#28 (512KB) + L1d L#28 (64KB) + L1i L#28 (64KB) + Core L#28 + PU > > L#28 (P#28) > > L2 L#29 (512KB) + L1d L#29 (64KB) + L1i L#29 (64KB) + Core L#29 + PU > > L#29 (P#29) > > L2 L#30 (512KB) + L1d L#30 (64KB) + L1i L#30 (64KB) + Core L#30 + PU > > L#30 (P#30) > > L2 L#31 (512KB) + L1d L#31 (64KB) + L1i L#31 (64KB) + Core L#31 + PU > > L#31 (P#31) > > HostBridge L#0 > > PCIBridge > > PCI 14e4:1639 > > Net L#0 "eth0" > > PCI 14e4:1639 > > Net L#1 "eth1" > > PCIBridge > > PCI 14e4:1639 > > Net L#2 "eth2" > > PCI 14e4:1639 > > Net L#3 "eth3" > > PCIBridge > > PCIBridge > > PCIBridge > > PCI 1000:0072 > > Block L#4 "sdb" > > Block L#5 "sda" > > PCI 1002:4390 > > Block L#6 "sr0" > > PCIBridge > > PCI 102b:0532 > > HostBridge L#7 > > PCIBridge > > PCI 15b3:6274 > > Net L#7 "ib0" > > OpenFabrics L#8 "mthca0" > > > > _______________________________________________ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users