Mahmood,
you need to manually remove /opt/openmpi/lib from your LD_LIBRARY_PATH
(or have your sysadmin do it if this is somehow done automatically)
the point of configuring with --enable-mpirun-prefix-by-default is you
do *not* need
to add /export/apps/siesta/openmpi-1.8.8/lib in your LD_LIBRARY_PATH
Cheers,
Gilles
On 9/12/2016 5:28 PM, Mahmood Naderan wrote:
Is the following output OK?
...
Making install in util
make[2]: Entering directory `/export/apps/siesta/openmpi-1.8.8/test/util'
make[3]: Entering directory `/export/apps/siesta/openmpi-1.8.8/test/util'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/export/apps/siesta/openmpi-1.8.8/test/util'
make[2]: Leaving directory `/export/apps/siesta/openmpi-1.8.8/test/util'
make[2]: Entering directory `/export/apps/siesta/openmpi-1.8.8/test'
make[3]: Entering directory `/export/apps/siesta/openmpi-1.8.8/test'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/export/apps/siesta/openmpi-1.8.8/test'
make[2]: Leaving directory `/export/apps/siesta/openmpi-1.8.8/test'
make[1]: Leaving directory `/export/apps/siesta/openmpi-1.8.8/test'
make[1]: Entering directory `/export/apps/siesta/openmpi-1.8.8'
make[2]: Entering directory `/export/apps/siesta/openmpi-1.8.8'
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/export/apps/siesta/openmpi-1.8.8'
make[1]: Leaving directory `/export/apps/siesta/openmpi-1.8.8'
root@cluster:openmpi-1.8.8# ls bin/
mpic++ mpif90-vt orte-clean otfcompress shmemrun vtjava
mpicc mpifort orted otfconfig vtc++ vtrun
mpiCC mpifort-vt orte-info otfdecompress vtcc
vtsetup
mpicc-vt mpirun orte-ps otfinfo vtCC vtsetup.jar
mpiCC-vt ompi-clean orterun otfmerge vtcxx vtunify
mpic++-vt ompi_info orte-server otfmerge-mpi vtf77
vtunify-mpi
mpicxx ompi-ps orte-top otfprint vtf90 vtwrapper
mpicxx-vt ompi-server oshcc otfprofile vtfilter
mpiexec ompi-top oshfort otfprofile-mpi vtfiltergen
mpif77 opal_wrapper oshmem_info otfshrink vtfiltergen-mpi
mpif77-vt opari oshrun shmemcc vtfilter-mpi
mpif90 ortecc otfaux shmemfort vtfort
root@cluster:openmpi-1.8.8# echo $LD_LIBRARY_PATH
/opt/gridengine/lib/linux-x64:/opt/openmpi/lib
root@cluster:openmpi-1.8.8# grep -r mpirun config.log
$ ./configure --prefix=/export/apps/siesta/openmpi-1.8.8
--enable-mpirun-prefix-by-default
configure:66027: result: '--prefix=/export/apps/siesta/openmpi-1.8.8'
'--enable-mpirun-prefix-by-default'
configure:97538: running /bin/sh './configure' --disable-dns
--disable-http --disable-rpc --disable-openssl --enable-thread-support
--disable-evport '--prefix=/export/apps/siesta/openmpi-1.8.8'
'--enable-mpirun-prefix-by-default' --cache-file=/dev/null --srcdir=.
--disable-option-checking
configure:290550: running /bin/sh './configure'
--disable-option-checking --with-openmpi-inside=1.7
'--prefix=/export/apps/siesta/openmpi-1.8.8'
'--enable-mpirun-prefix-by-default'
CPPFLAGS=-I/export/apps/siesta/openmpi-1.8.8/ompi/include
LDFLAGS=-L/export/apps/siesta/openmpi-1.8.8/ompi/.libs
--cache-file=/dev/null --srcdir=. --disable-option-checking
root@cluster:openmpi-1.8.8#
So I ran
# ./configure --prefix=/export/apps/siesta/openmpi-1.8.8
--enable-mpirun-prefix-by-default
# make
# make install
However, LD_LIBRARY_PATH still shows the previous install (/opt/openmpi)
Regards,
Mahmood
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