It seems that it is part of rocks-openmpi. I will find out how to remove it
and will come back.

Regards,
Mahmood



On Mon, Sep 12, 2016 at 1:06 PM, Gilles Gouaillardet <gil...@rist.or.jp>
wrote:

> Mahmood,
>
> you need to manually remove /opt/openmpi/lib from your LD_LIBRARY_PATH
> (or have your sysadmin do it if this is somehow done automatically)
>
> the point of configuring with --enable-mpirun-prefix-by-default is you do
> *not* need
> to add /export/apps/siesta/openmpi-1.8.8/lib in your LD_LIBRARY_PATH
>
> Cheers,
>
> Gilles
>
>
> On 9/12/2016 5:28 PM, Mahmood Naderan wrote:
>
> Is the following output OK?
>
>
> ...
> Making install in util
> make[2]: Entering directory `/export/apps/siesta/openmpi-1.8.8/test/util'
> make[3]: Entering directory `/export/apps/siesta/openmpi-1.8.8/test/util'
> make[3]: Nothing to be done for `install-exec-am'.
> make[3]: Nothing to be done for `install-data-am'.
> make[3]: Leaving directory `/export/apps/siesta/openmpi-1.8.8/test/util'
> make[2]: Leaving directory `/export/apps/siesta/openmpi-1.8.8/test/util'
> make[2]: Entering directory `/export/apps/siesta/openmpi-1.8.8/test'
> make[3]: Entering directory `/export/apps/siesta/openmpi-1.8.8/test'
> make[3]: Nothing to be done for `install-exec-am'.
> make[3]: Nothing to be done for `install-data-am'.
> make[3]: Leaving directory `/export/apps/siesta/openmpi-1.8.8/test'
> make[2]: Leaving directory `/export/apps/siesta/openmpi-1.8.8/test'
> make[1]: Leaving directory `/export/apps/siesta/openmpi-1.8.8/test'
> make[1]: Entering directory `/export/apps/siesta/openmpi-1.8.8'
> make[2]: Entering directory `/export/apps/siesta/openmpi-1.8.8'
> make[2]: Nothing to be done for `install-exec-am'.
> make[2]: Nothing to be done for `install-data-am'.
> make[2]: Leaving directory `/export/apps/siesta/openmpi-1.8.8'
> make[1]: Leaving directory `/export/apps/siesta/openmpi-1.8.8'
> root@cluster:openmpi-1.8.8# ls bin/
> mpic++     mpif90-vt     orte-clean   otfcompress     shmemrun
> vtjava
> mpicc      mpifort       orted        otfconfig       vtc++
> vtrun
> mpiCC      mpifort-vt    orte-info    otfdecompress   vtcc
> vtsetup
> mpicc-vt   mpirun        orte-ps      otfinfo         vtCC
> vtsetup.jar
> mpiCC-vt   ompi-clean    orterun      otfmerge        vtcxx
> vtunify
> mpic++-vt  ompi_info     orte-server  otfmerge-mpi    vtf77
> vtunify-mpi
> mpicxx     ompi-ps       orte-top     otfprint        vtf90
> vtwrapper
> mpicxx-vt  ompi-server   oshcc        otfprofile      vtfilter
> mpiexec    ompi-top      oshfort      otfprofile-mpi  vtfiltergen
> mpif77     opal_wrapper  oshmem_info  otfshrink       vtfiltergen-mpi
> mpif77-vt  opari         oshrun       shmemcc         vtfilter-mpi
> mpif90     ortecc        otfaux       shmemfort       vtfort
> root@cluster:openmpi-1.8.8# echo $LD_LIBRARY_PATH
> /opt/gridengine/lib/linux-x64:/opt/openmpi/lib
> root@cluster:openmpi-1.8.8# grep -r mpirun config.log
>   $ ./configure --prefix=/export/apps/siesta/openmpi-1.8.8
> --enable-mpirun-prefix-by-default
> configure:66027: result:  '--prefix=/export/apps/siesta/openmpi-1.8.8'
> '--enable-mpirun-prefix-by-default'
> configure:97538: running /bin/sh './configure' --disable-dns
> --disable-http --disable-rpc --disable-openssl --enable-thread-support
> --disable-evport  '--prefix=/export/apps/siesta/openmpi-1.8.8'
> '--enable-mpirun-prefix-by-default' --cache-file=/dev/null --srcdir=.
> --disable-option-checking
> configure:290550: running /bin/sh './configure' --disable-option-checking
> --with-openmpi-inside=1.7 '--prefix=/export/apps/siesta/openmpi-1.8.8'
> '--enable-mpirun-prefix-by-default' CPPFLAGS=-I/export/apps/
> siesta/openmpi-1.8.8/ompi/include 
> LDFLAGS=-L/export/apps/siesta/openmpi-1.8.8/ompi/.libs
> --cache-file=/dev/null --srcdir=. --disable-option-checking
> root@cluster:openmpi-1.8.8#
>
>
>
>
>
>
> So I ran
>
> # ./configure --prefix=/export/apps/siesta/openmpi-1.8.8
> --enable-mpirun-prefix-by-default
> # make
> # make install
>
> However, LD_LIBRARY_PATH still shows the previous install (/opt/openmpi)
>
>
> Regards,
> Mahmood
>
>
>
>
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