It seems that it is part of rocks-openmpi. I will find out how to remove it and will come back.
Regards, Mahmood On Mon, Sep 12, 2016 at 1:06 PM, Gilles Gouaillardet <gil...@rist.or.jp> wrote: > Mahmood, > > you need to manually remove /opt/openmpi/lib from your LD_LIBRARY_PATH > (or have your sysadmin do it if this is somehow done automatically) > > the point of configuring with --enable-mpirun-prefix-by-default is you do > *not* need > to add /export/apps/siesta/openmpi-1.8.8/lib in your LD_LIBRARY_PATH > > Cheers, > > Gilles > > > On 9/12/2016 5:28 PM, Mahmood Naderan wrote: > > Is the following output OK? > > > ... > Making install in util > make[2]: Entering directory `/export/apps/siesta/openmpi-1.8.8/test/util' > make[3]: Entering directory `/export/apps/siesta/openmpi-1.8.8/test/util' > make[3]: Nothing to be done for `install-exec-am'. > make[3]: Nothing to be done for `install-data-am'. > make[3]: Leaving directory `/export/apps/siesta/openmpi-1.8.8/test/util' > make[2]: Leaving directory `/export/apps/siesta/openmpi-1.8.8/test/util' > make[2]: Entering directory `/export/apps/siesta/openmpi-1.8.8/test' > make[3]: Entering directory `/export/apps/siesta/openmpi-1.8.8/test' > make[3]: Nothing to be done for `install-exec-am'. > make[3]: Nothing to be done for `install-data-am'. > make[3]: Leaving directory `/export/apps/siesta/openmpi-1.8.8/test' > make[2]: Leaving directory `/export/apps/siesta/openmpi-1.8.8/test' > make[1]: Leaving directory `/export/apps/siesta/openmpi-1.8.8/test' > make[1]: Entering directory `/export/apps/siesta/openmpi-1.8.8' > make[2]: Entering directory `/export/apps/siesta/openmpi-1.8.8' > make[2]: Nothing to be done for `install-exec-am'. > make[2]: Nothing to be done for `install-data-am'. > make[2]: Leaving directory `/export/apps/siesta/openmpi-1.8.8' > make[1]: Leaving directory `/export/apps/siesta/openmpi-1.8.8' > root@cluster:openmpi-1.8.8# ls bin/ > mpic++ mpif90-vt orte-clean otfcompress shmemrun > vtjava > mpicc mpifort orted otfconfig vtc++ > vtrun > mpiCC mpifort-vt orte-info otfdecompress vtcc > vtsetup > mpicc-vt mpirun orte-ps otfinfo vtCC > vtsetup.jar > mpiCC-vt ompi-clean orterun otfmerge vtcxx > vtunify > mpic++-vt ompi_info orte-server otfmerge-mpi vtf77 > vtunify-mpi > mpicxx ompi-ps orte-top otfprint vtf90 > vtwrapper > mpicxx-vt ompi-server oshcc otfprofile vtfilter > mpiexec ompi-top oshfort otfprofile-mpi vtfiltergen > mpif77 opal_wrapper oshmem_info otfshrink vtfiltergen-mpi > mpif77-vt opari oshrun shmemcc vtfilter-mpi > mpif90 ortecc otfaux shmemfort vtfort > root@cluster:openmpi-1.8.8# echo $LD_LIBRARY_PATH > /opt/gridengine/lib/linux-x64:/opt/openmpi/lib > root@cluster:openmpi-1.8.8# grep -r mpirun config.log > $ ./configure --prefix=/export/apps/siesta/openmpi-1.8.8 > --enable-mpirun-prefix-by-default > configure:66027: result: '--prefix=/export/apps/siesta/openmpi-1.8.8' > '--enable-mpirun-prefix-by-default' > configure:97538: running /bin/sh './configure' --disable-dns > --disable-http --disable-rpc --disable-openssl --enable-thread-support > --disable-evport '--prefix=/export/apps/siesta/openmpi-1.8.8' > '--enable-mpirun-prefix-by-default' --cache-file=/dev/null --srcdir=. > --disable-option-checking > configure:290550: running /bin/sh './configure' --disable-option-checking > --with-openmpi-inside=1.7 '--prefix=/export/apps/siesta/openmpi-1.8.8' > '--enable-mpirun-prefix-by-default' CPPFLAGS=-I/export/apps/ > siesta/openmpi-1.8.8/ompi/include > LDFLAGS=-L/export/apps/siesta/openmpi-1.8.8/ompi/.libs > --cache-file=/dev/null --srcdir=. --disable-option-checking > root@cluster:openmpi-1.8.8# > > > > > > > So I ran > > # ./configure --prefix=/export/apps/siesta/openmpi-1.8.8 > --enable-mpirun-prefix-by-default > # make > # make install > > However, LD_LIBRARY_PATH still shows the previous install (/opt/openmpi) > > > Regards, > Mahmood > > > > > _______________________________________________ > users mailing > listus...@lists.open-mpi.orghttps://rfd.newmexicoconsortium.org/mailman/listinfo/users > > > > _______________________________________________ > users mailing list > users@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/users >
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