That's a stumper. Only thing I can think of is that the LD_LIBRARY_PATH is being overwritten somewhere inside the Makefile, or perhaps that it isn't properly exported...?
As a graspable straw, try $ set -a to export all variables, then $ source /opt/intel/composer_xe_2013_sp1.2.144/bin/compilervars.sh (I may have the path to your compilervars.sh wrong). That should insure that everything is properly exported. It sure looks to me like the compilers aren't finding the right library paths. -- bennet On Thu, Nov 17, 2016 at 9:44 AM, Professor W P Jones <w.jo...@imperial.ac.uk> wrote: > The .configure is: > > ./configure PREFIX=/opt/openmpi-2.0.1-intel-14.0.2 CC=icc CXX=icpc F77=ifort > FC=ifort > > and the output from printenv | grep LIBRARY is: > > LIBRARY_PATH=/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/../compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/tbb/lib/intel64/gcc4.4 > MIC_LD_LIBRARY_PATH=/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/mic:/opt/intel/composer_xe_2013_sp1.2.144/mpirt/lib/mic:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/mic:/opt/intel/composer_xe_2013_sp1.2.144/mkl/lib/mic:/opt/intel/composer_xe_2013_sp1.2.144/tbb/lib/mic > LD_LIBRARY_PATH=/opt/lf6481/lib64:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/mpirt/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/../compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/tbb/lib/intel64/gcc4.4:/opt/lf6481/lib64:/usr/StorMan:/usr/StorMan/ssl/lib:/usr/StorMan/pegasus/lib: > MIC_LIBRARY_PATH=/opt/intel/composer_xe_2013_sp1.2.144/tbb/lib/mic > > Bill > > > Professor W P Jones, FREng > Department of Mechanical Engineering > Imperial College London > Exhibition Road > London SW7 2AZ > Tel: +44 (0)20 7594 7037/7033 > Mobile +44 (0)776 495 9702 > Fax: +44 (0)20 7594 5702 > E-mail: w.jo...@imperial.ac.uk > web site: http://www.imperial.ac.uk/me > > On 17/11/16 14:33, Bennet Fauber wrote: >> >> Can you include your entire ./configure line? Also, it would be >> useful, perhaps to look at the output of >> >> $ printenv | grep LIBRARY >> >> to make sure that all Intel library paths made it into the appropriate >> variables. >> >> When I build 1.10.2, I had these: >> >> >> LIBRARY_PATH=/sw/arcts/centos7/intel/2013.1.046/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/sw/arcts/centos7/intel/2013.1.046/composer_xe_2013_sp1.2.144/mkl/lib/intel64 >> >> >> LD_LIBRARY_PATH=/sw/arcts/centos7/intel/2013.1.046/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/sw/arcts/centos7/intel/2013.1.046/composer_xe_2013_sp1.2.144/mkl/lib/intel64:/sw/arcts/centos7/intel/2013.1.046/composer_xe_2013_sp1.2.144/compiler/lib/intel64_lin >> >> and those sufficed. I have not tried OMPI 2.x. >> >> -- bennet >> >> >> >> On Thu, Nov 17, 2016 at 9:20 AM, Professor W P Jones >> <w.jo...@imperial.ac.uk> wrote: >>> >>> Yes, ifort -v and icpc -v give ifort version 14.0.2 and icpc version >>> 14.0.2 >>> (gcc version 4.8.0 compatibility) >>> >>> Bill >>> >>> Professor W P Jones, FREng >>> Department of Mechanical Engineering >>> Imperial College London >>> Exhibition Road >>> London SW7 2AZ >>> Tel: +44 (0)20 7594 7037/7033 >>> Mobile +44 (0)776 495 9702 >>> Fax: +44 (0)20 7594 5702 >>> E-mail: w.jo...@imperial.ac.uk >>> web site: http://www.imperial.ac.uk/me >>> >>> On 17/11/16 14:02, Tim Prince via users wrote: >>>> >>>> >>>> On 11/17/2016 8:45 AM, Professor W P Jones wrote: >>>>> >>>>> Hi >>>>> >>>>> I am trying to install openmpi-2.0.1 togeter with the version 14.0.2 >>>>> intel compilers and I an having problems. The configure script with >>>>> CC=icc CXX=icpc and FC=ifort runs successfully but when i issue make >>>>> all install this fails with the output: >>>>> >>>>> >>>>> Making all in tools/ompi_info >>>>> make[2]: Entering directory >>>>> `/usr/local/src/openmpi-2.0.1/ompi/tools/ompi_info' >>>>> CCLD ompi_info >>>>> ld: warning: libimf.so, needed by ../../../ompi/.libs/libmpi.so, not >>>>> found (try using -rpath or -rpath-link) >>>>> ld: warning: libsvml.so, needed by ../../../ompi/.libs/libmpi.so, not >>>>> found (try using -rpath or -rpath-link) >>>>> ld: warning: libirng.so, needed by ../../../ompi/.libs/libmpi.so, not >>>>> found (try using -rpath or -rpath-link) >>>>> ld: warning: libintlc.so.5, needed by ../../../ompi/.libs/libmpi.so, >>>>> not found (try using -rpath or -rpath-link) >>>>> ld: .libs/ompi_info: hidden symbol `__intel_cpu_features_init_x' in >>>>> >>>>> >>>>> /opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64//libirc.a(cpu_feature_disp.o) >>>>> is referenced by DSO >>>>> ld: final link failed: Bad value >>>>> make[2]: *** [ompi_info] Error 1 >>>>> make[2]: Leaving directory >>>>> `/usr/local/src/openmpi-2.0.1/ompi/tools/ompi_info' >>>>> make[1]: *** [all-recursive] Error 1 >>>>> make[1]: Leaving directory `/usr/local/src/openmpi-2.0.1/ompi' >>>>> make: *** [all-recursive] Error 1 >>>>> >>>> Do you have the Intel compilervars.[c]sh sourced (and associated library >>>> files visible) on each node where you expect to install? >>>> >>> _______________________________________________ >>> users mailing list >>> users@lists.open-mpi.org >>> https://rfd.newmexicoconsortium.org/mailman/listinfo/users >> >> _______________________________________________ >> users mailing list >> users@lists.open-mpi.org >> https://rfd.newmexicoconsortium.org/mailman/listinfo/users > > > _______________________________________________ > users mailing list > users@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/users _______________________________________________ users mailing list users@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/users
