Hi, at first, you might want to remove path related to Intel MPI runtime (e.g. /opt/intel/composer_xe_2013_sp1.2.144/mpirt/lib/intel64) from your environment
if you are using bash, double check you export LD_LIBRARY_PATH (otherwise echo $LD_LIBRARY_PATH and the linker see different things) then you can file ompi/.libs/libmpi.so file ompi/tools/.libs/ompi_info.o and they are both 64 bits x86_64 (e.g. no 32 bits, nor MIC binaries) ldd ompi/.libs/libmpi.so should resolve all intel runtime libs. then i recommend you restart configure from a clean directory if it still does not work, you can cd ompi/tools make V=1 and post the output Cheers, Gilles On Thu, Nov 17, 2016 at 8:12 AM, Bennet Fauber <ben...@umich.edu> wrote: > That's a stumper. Only thing I can think of is that the > LD_LIBRARY_PATH is being overwritten somewhere inside the Makefile, or > perhaps that it isn't properly exported...? > > As a graspable straw, try > > $ set -a > > to export all variables, then > > $ source /opt/intel/composer_xe_2013_sp1.2.144/bin/compilervars.sh > > (I may have the path to your compilervars.sh wrong). That should > insure that everything is properly exported. > > It sure looks to me like the compilers aren't finding the right library paths. > > -- bennet > > > > On Thu, Nov 17, 2016 at 9:44 AM, Professor W P Jones > <w.jo...@imperial.ac.uk> wrote: >> The .configure is: >> >> ./configure PREFIX=/opt/openmpi-2.0.1-intel-14.0.2 CC=icc CXX=icpc F77=ifort >> FC=ifort >> >> and the output from printenv | grep LIBRARY is: >> >> LIBRARY_PATH=/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/../compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/tbb/lib/intel64/gcc4.4 >> MIC_LD_LIBRARY_PATH=/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/mic:/opt/intel/composer_xe_2013_sp1.2.144/mpirt/lib/mic:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/mic:/opt/intel/composer_xe_2013_sp1.2.144/mkl/lib/mic:/opt/intel/composer_xe_2013_sp1.2.144/tbb/lib/mic >> LD_LIBRARY_PATH=/opt/lf6481/lib64:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/mpirt/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/../compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/tbb/lib/intel64/gcc4.4:/opt/lf6481/lib64:/usr/StorMan:/usr/StorMan/ssl/lib:/usr/StorMan/pegasus/lib: >> MIC_LIBRARY_PATH=/opt/intel/composer_xe_2013_sp1.2.144/tbb/lib/mic >> >> Bill >> >> >> Professor W P Jones, FREng >> Department of Mechanical Engineering >> Imperial College London >> Exhibition Road >> London SW7 2AZ >> Tel: +44 (0)20 7594 7037/7033 >> Mobile +44 (0)776 495 9702 >> Fax: +44 (0)20 7594 5702 >> E-mail: w.jo...@imperial.ac.uk >> web site: http://www.imperial.ac.uk/me >> >> On 17/11/16 14:33, Bennet Fauber wrote: >>> >>> Can you include your entire ./configure line? Also, it would be >>> useful, perhaps to look at the output of >>> >>> $ printenv | grep LIBRARY >>> >>> to make sure that all Intel library paths made it into the appropriate >>> variables. >>> >>> When I build 1.10.2, I had these: >>> >>> >>> LIBRARY_PATH=/sw/arcts/centos7/intel/2013.1.046/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/sw/arcts/centos7/intel/2013.1.046/composer_xe_2013_sp1.2.144/mkl/lib/intel64 >>> >>> >>> LD_LIBRARY_PATH=/sw/arcts/centos7/intel/2013.1.046/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/sw/arcts/centos7/intel/2013.1.046/composer_xe_2013_sp1.2.144/mkl/lib/intel64:/sw/arcts/centos7/intel/2013.1.046/composer_xe_2013_sp1.2.144/compiler/lib/intel64_lin >>> >>> and those sufficed. I have not tried OMPI 2.x. >>> >>> -- bennet >>> >>> >>> >>> On Thu, Nov 17, 2016 at 9:20 AM, Professor W P Jones >>> <w.jo...@imperial.ac.uk> wrote: >>>> >>>> Yes, ifort -v and icpc -v give ifort version 14.0.2 and icpc version >>>> 14.0.2 >>>> (gcc version 4.8.0 compatibility) >>>> >>>> Bill >>>> >>>> Professor W P Jones, FREng >>>> Department of Mechanical Engineering >>>> Imperial College London >>>> Exhibition Road >>>> London SW7 2AZ >>>> Tel: +44 (0)20 7594 7037/7033 >>>> Mobile +44 (0)776 495 9702 >>>> Fax: +44 (0)20 7594 5702 >>>> E-mail: w.jo...@imperial.ac.uk >>>> web site: http://www.imperial.ac.uk/me >>>> >>>> On 17/11/16 14:02, Tim Prince via users wrote: >>>>> >>>>> >>>>> On 11/17/2016 8:45 AM, Professor W P Jones wrote: >>>>>> >>>>>> Hi >>>>>> >>>>>> I am trying to install openmpi-2.0.1 togeter with the version 14.0.2 >>>>>> intel compilers and I an having problems. The configure script with >>>>>> CC=icc CXX=icpc and FC=ifort runs successfully but when i issue make >>>>>> all install this fails with the output: >>>>>> >>>>>> >>>>>> Making all in tools/ompi_info >>>>>> make[2]: Entering directory >>>>>> `/usr/local/src/openmpi-2.0.1/ompi/tools/ompi_info' >>>>>> CCLD ompi_info >>>>>> ld: warning: libimf.so, needed by ../../../ompi/.libs/libmpi.so, not >>>>>> found (try using -rpath or -rpath-link) >>>>>> ld: warning: libsvml.so, needed by ../../../ompi/.libs/libmpi.so, not >>>>>> found (try using -rpath or -rpath-link) >>>>>> ld: warning: libirng.so, needed by ../../../ompi/.libs/libmpi.so, not >>>>>> found (try using -rpath or -rpath-link) >>>>>> ld: warning: libintlc.so.5, needed by ../../../ompi/.libs/libmpi.so, >>>>>> not found (try using -rpath or -rpath-link) >>>>>> ld: .libs/ompi_info: hidden symbol `__intel_cpu_features_init_x' in >>>>>> >>>>>> >>>>>> /opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64//libirc.a(cpu_feature_disp.o) >>>>>> is referenced by DSO >>>>>> ld: final link failed: Bad value >>>>>> make[2]: *** [ompi_info] Error 1 >>>>>> make[2]: Leaving directory >>>>>> `/usr/local/src/openmpi-2.0.1/ompi/tools/ompi_info' >>>>>> make[1]: *** [all-recursive] Error 1 >>>>>> make[1]: Leaving directory `/usr/local/src/openmpi-2.0.1/ompi' >>>>>> make: *** [all-recursive] Error 1 >>>>>> >>>>> Do you have the Intel compilervars.[c]sh sourced (and associated library >>>>> files visible) on each node where you expect to install? >>>>> >>>> _______________________________________________ >>>> users mailing list >>>> users@lists.open-mpi.org >>>> https://rfd.newmexicoconsortium.org/mailman/listinfo/users >>> >>> _______________________________________________ >>> users mailing list >>> users@lists.open-mpi.org >>> https://rfd.newmexicoconsortium.org/mailman/listinfo/users >> >> >> _______________________________________________ >> users mailing list >> users@lists.open-mpi.org >> https://rfd.newmexicoconsortium.org/mailman/listinfo/users > _______________________________________________ > users mailing list > users@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/users _______________________________________________ users mailing list users@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/users
