John, what if you move some parameters to CPPFLAGS and CXXCPPFLAGS (see the new configure command line below)
Cheers, Gilles '/Users/cary/projects/ulixesall-llvm/builds/openmpi-4.0.1/nodl/../configure' \ --prefix=/Volumes/GordianStorage/opt/contrib-llvm7_appleclang/openmpi-4.0.1-nodl \ CC='/Volumes/GordianStorage/opt/clang+llvm-7.0.0-x86_64-apple-darwin/bin/clang' \ CXX='/Volumes/GordianStorage/opt/clang+llvm-7.0.0-x86_64-apple-darwin/bin/clang++' \ FC='/opt/homebrew/bin/gfortran-6' \ F77='/opt/homebrew/bin/gfortran-6' \ CFLAGS='-fvisibility=default -mmacosx-version-min=10.10 -fPIC -pipe' \ CPPFLAGS='-I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include -DSTDC_HEADERS' \ CXXFLAGS='-std=c++11 -stdlib=libc++ -fvisibility=default -mmacosx-version-min=10.10 -fPIC -pipe' \ CXXCPFLAGS='-I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include' \ FCFLAGS='-fPIC -pipe' \ --enable-static \ --with-pic \ --disable-dlopen \ --enable-mpirun-prefix-by-default On Wed, Apr 24, 2019 at 7:01 PM Jeff Squyres (jsquyres) via users <users@lists.open-mpi.org> wrote: > > Can you send at least your config.log file? It would be good to know why the > "STDC" test is reporting that this setup does not have STDC headers when it > actually does. > > > > On Apr 23, 2019, at 8:14 PM, John R. Cary <c...@txcorp.com> wrote: > > > > It appears that the problem is with AC_HEADER_STDC, which is reporting > > that this setup does not have stdc headers when in fact it does. > > > > Overriding with > > > > CFLAGS='-fvisibility=default -mmacosx-version-min=10.10 > > -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include > > -fPIC -pipe -DSTDC_HEADERS -DOPAL_STDC_HEADERS' > > > > in particular, the last two defines, fixes this. > > > > .................John > > > > > > > > On 4/23/2019 4:59 PM, Jeff Squyres (jsquyres) wrote: > >> The version of LLVM that I have installed on my Mac 10.14.4 is: > >> > >> $ where clang > >> /usr/bin/clang > >> $ clang --version > >> Apple LLVM version 10.0.1 (clang-1001.0.46.4) > >> Target: x86_64-apple-darwin18.5.0 > >> Thread model: posix > >> InstalledDir: > >> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin > >> > >> I don't know how that compares to upstream clang v7.x...? > >> > >> More below. > >> > >> > >> > >>> On Apr 23, 2019, at 6:26 PM, John R. Cary via users > >>> <users@lists.open-mpi.org> wrote: > >>> > >>> The failure is > >>> > >>> In file included from > >>> /Users/cary/projects/ulixesall-llvm/builds/openmpi-4.0.1/nodl/../ompi/datatype/ompi_datatype_external.c:29: > >>> In file included from > >>> /Users/cary/projects/ulixesall-llvm/builds/openmpi-4.0.1/nodl/../ompi/communicator/communicator.h:38: > >>> In file included from > >>> /Users/cary/projects/ulixesall-llvm/builds/openmpi-4.0.1/nodl/../ompi/errhandler/errhandler.h:33: > >>> ../../ompi/include/mpi.h:397:9: error: unknown type name 'ptrdiff_t' > >>> typedef OMPI_MPI_AINT_TYPE MPI_Aint; > >>> ^ > >>> ../../opal/include/opal_config.h:1911:28: note: expanded from macro > >>> 'OMPI_MPI_AINT_TYPE' > >>> #define OMPI_MPI_AINT_TYPE ptrdiff_t > >>> > >>> > >>> Is there a known fix for this? > >>> > >>> Thx...John Cary > >>> > >>> > >>> More info: > >>> > >>> Configured with > >>> > >> A few notes on your configure line: > >> > >>> '/Users/cary/projects/ulixesall-llvm/builds/openmpi-4.0.1/nodl/../configure' > >>> \ > >>> --prefix=/Volumes/GordianStorage/opt/contrib-llvm7_appleclang/openmpi-4.0.1-nodl > >>> \ > >>> CC='/Volumes/GordianStorage/opt/clang+llvm-7.0.0-x86_64-apple-darwin/bin/clang' > >>> \ > >>> CXX='/Volumes/GordianStorage/opt/clang+llvm-7.0.0-x86_64-apple-darwin/bin/clang++' > >>> \ > >> The MPI C++ bindings are no longer built by default, and you're not > >> enabling them (via --enable-mpi-cxx), so you don't need to specify CXX or > >> CXXFLAGS here. > >> > >>> FC='/opt/homebrew/bin/gfortran-6' \ > >>> F77='/opt/homebrew/bin/gfortran-6' \ > >> F77 is ignored these days; FC is the only one that matters. > >> > >>> CFLAGS='-fvisibility=default -mmacosx-version-min=10.10 > >>> -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include > >>> -fPIC -pipe -DSTDC_HEADERS' \ > >> Do you need all these CFLAGS? E.g., does clang not -I that directory by > >> default (I don't actually know if it is necessary or not)? What does > >> -DSTDC_HEADERS do? > >> > >>> CXXFLAGS='-std=c++11 -stdlib=libc++ -fvisibility=default > >>> -mmacosx-version-min=10.10 > >>> -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include > >>> -fPIC -pipe' \ > >>> FCFLAGS='-fPIC -pipe' \ > >>> --enable-static \ > >>> --with-pic \ > >>> --disable-dlopen \ > >>> --enable-mpirun-prefix-by-default > >> I don't have that version of clang, but I installed gfortran 6.3.0 via > >> homebrew and configured with: > >> > >> ./configure --prefix=/Users/jsquyres/bogus CC=clang FC=gfortran > >> 'CFLAGS=-fvisibility=default -mmacosx-version-min=10.10 > >> -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include > >> -fPIC -pipe -DSTDC_HEADERS' 'FCFLAGS=-fPIC -pipe' --enable-static > >> --with-pic --disable-dlopen --enable-mpirun-prefix-by-default > >> > >> And Open MPI v4.0.1 build ok for me...? > >> > >> Can you send all the information listed here: > >> > >> https://www.open-mpi.org/community/help/ > >> > > > > > -- > Jeff Squyres > jsquy...@cisco.com > > _______________________________________________ > users mailing list > users@lists.open-mpi.org > https://lists.open-mpi.org/mailman/listinfo/users _______________________________________________ users mailing list users@lists.open-mpi.org https://lists.open-mpi.org/mailman/listinfo/users
