Hi Luca,
first of all thank you for your prompt response.
I start from the beginning with the explaination of the problem.
I have two different directories of MR dicom images and both of them refer
to the same patient. I reckoned that the difference between them is the time
of relaxation because the directories are named respectively T1 and T2.
Within T1 there's a sequence of images named as follows:
MR010001001.dcm, MR011001001.dcm, MR012001001.dcm, ...., MR039001001.dcm
for a total of 30 images.
Within T2 there are only 5 images named as above starting by MR039001001.dcm
to MR043001001.dcm.
When I tryed to open the sequence for the first time I copied T1 directory
within the vmtk folder and ran the command
vmtkimagereader -f dicom -d T1 --pipe vmtkimageviewer
and like I said in the previous mail only the first image named
MR010001001.dcm opened.
I tryed to do what you suggested on a Unix platform
I wrote
vmtkimagereader -ifile MR010001001.dcm --pipe vmtkimageviewer
and the result is the same. The only image opened is this one.
Now I think the problem could be clearer to you. I hope what I wrote is
enough to find a solution.
Thank you in advance
Best Regards
2011/10/12 Luca Antiga <luca.ant...@orobix.com>
> Hi Giuseppe,
> welcome to vmtk. There shouldn't be any difference between Windows and
> Unix-like.
>
> Can you please post the exact command you are running (not the reference,
> as you did, but the actual command with the paths)?
>
> Also, you may want to try the following:
> vmtkimagereader -ifile first_file_in_the_series.dcm --pipe vmtkimageviewer
>
> It is also possible that your MR dicom directory contains more than one
> series, so you'll need to separate them beforehands. Just try the above and
> we'll move from there.
>
> Best regards
>
>
> Luca
>
>
> On Oct 11, 2011, at 10:08 PM, Giuseppe Isu wrote:
>
> Hi everybody,
> I'm Giuseppe. I'm new to vmtk. Recently I've started to get into it and
> I've done all the tutorials. I'm now dealing with a project for which I need
> to open a sequence of MR DICOM images in order to reconstruct a carotid
> geometry. I use vmtk on a win32 platform and I've already used vmtk to
> perform meshes and computing centerlines successfully.
> Using the command
> *vmtkimagereader -f dicom -d "directory_path *" --pipe vmtkimageviewer
> *where *directory_path* is my files directory located within the vmtk main
> directory.
> When I write this command only the first image of the sequence is opened
> but I can't understand which is the problem.
> Can you give me some tips? Should I try to open these files on a Unix
> platform?
> Best regards
> --
> Giuseppe
>
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--
Giuseppe
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