Hi Giuseppe,
can you copy and paste the output you get on the terminal when the pipe is
running?
Thanks
Luca
On Oct 12, 2011, at 11:57 AM, Giuseppe Isu wrote:
> Hi Luca,
>
> first of all thank you for your prompt response.
>
> I start from the beginning with the explaination of the problem.
> I have two different directories of MR dicom images and both of them refer to
> the same patient. I reckoned that the difference between them is the time of
> relaxation because the directories are named respectively T1 and T2.
> Within T1 there's a sequence of images named as follows:
>
> MR010001001.dcm, MR011001001.dcm, MR012001001.dcm, ...., MR039001001.dcm
>
> for a total of 30 images.
> Within T2 there are only 5 images named as above starting by MR039001001.dcm
> to MR043001001.dcm.
> When I tryed to open the sequence for the first time I copied T1 directory
> within the vmtk folder and ran the command
>
> vmtkimagereader -f dicom -d T1 --pipe vmtkimageviewer
>
> and like I said in the previous mail only the first image named
> MR010001001.dcm opened.
> I tryed to do what you suggested on a Unix platform
> I wrote
>
> vmtkimagereader -ifile MR010001001.dcm --pipe vmtkimageviewer
>
> and the result is the same. The only image opened is this one.
>
> Now I think the problem could be clearer to you. I hope what I wrote is
> enough to find a solution.
>
> Thank you in advance
>
> Best Regards
>
>
>
>
>
>
> 2011/10/12 Luca Antiga <luca.ant...@orobix.com>
> Hi Giuseppe,
> welcome to vmtk. There shouldn't be any difference between Windows and
> Unix-like.
>
> Can you please post the exact command you are running (not the reference, as
> you did, but the actual command with the paths)?
>
> Also, you may want to try the following:
> vmtkimagereader -ifile first_file_in_the_series.dcm --pipe vmtkimageviewer
>
> It is also possible that your MR dicom directory contains more than one
> series, so you'll need to separate them beforehands. Just try the above and
> we'll move from there.
>
> Best regards
>
>
> Luca
>
>
> On Oct 11, 2011, at 10:08 PM, Giuseppe Isu wrote:
>
>> Hi everybody,
>> I'm Giuseppe. I'm new to vmtk. Recently I've started to get into it and I've
>> done all the tutorials. I'm now dealing with a project for which I need to
>> open a sequence of MR DICOM images in order to reconstruct a carotid
>> geometry. I use vmtk on a win32 platform and I've already used vmtk to
>> perform meshes and computing centerlines successfully.
>> Using the command
>> vmtkimagereader -f dicom -d "directory_path *" --pipe vmtkimageviewer
>> where directory_path is my files directory located within the vmtk main
>> directory.
>> When I write this command only the first image of the sequence is opened but
>> I can't understand which is the problem.
>> Can you give me some tips? Should I try to open these files on a Unix
>> platform?
>> Best regards
>> --
>> Giuseppe
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>
>
>
> --
> Giuseppe
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definitive record of customers, application performance, security
threats, fraudulent activity and more. Splunk takes this data and makes
sense of it. Business sense. IT sense. Common sense.
http://p.sf.net/sfu/splunk-d2d-oct
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