Dear Sacha, I guess your question boils down to this: > Until now everything seems to work fine, although when i check cg.gro > file using VMD ijust get unconnected dots instead of chains with 10 > beads. Is it normal?
This is normal. VMD draws bonds according to a standard cutoff. So if you don't see them in your cg.gro, this just means that the distances between your CG beads is larger than that value. If you still want to see the bonds, you can either: (1) Create and load an additional file (PSF) which contains the connectivity or (2) Use the "dynamic bonds" representation as described below: http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/2797.html Hope this helps, - Mara -- You received this message because you are subscribed to the Google Groups "votca" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/votca?hl=en.
